Co-expression analysis

Gene ID PtpAffx.224262.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g29575: AFP3 (ABI FIVE BINDING PROTEIN 3) (HF=3e-1)
Module size 6 genes
NF 0.08
%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.89PtpAffx.224262.1.S1_atpmrna42662hypothetical protein-3e-1At3g29575AFP3 (ABI FIVE BINDING PROTEIN 3)O.I.H.G.S.X.
0.2034.60.91PtpAffx.214435.1.S1_atpmrna28072hypothetical protein-2e-4At2g238905' nucleotidase family proteinO.I.H.G.S.X.
0.1321.60.92PtpAffx.206781.1.S1_s_atpmrna13465hypothetical protein-3e-18At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.0711.60.91PtpAffx.223640.1.S1_s_atpmrna41727hypothetical protein-9e-1At5g40850UPM1 (UROPHORPHYRIN METHYLASE 1)O.I.H.G.S.X.
0.0711.60.93PtpAffx.17919.2.A1_x_atCV275513--4e-26At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.035.20.91Ptp.5469.1.S1_s_atCX176421hypothetical protein-3e-47At1g27530-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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