Co-expression analysis

Gene ID	PtpAffx.224258.1.S1_at
Gene name	cc-nbs-lrr resistance protein
Homology with Arabidopsis	Similar to At3g29575: AFP3 (ABI FIVE BINDING PROTEIN 3) (HF=5e-1)
Module size	12 genes
NF	0.25
%ile	45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.88	PtpAffx.224258.1.S1_at	pmrna42653	cc-nbs-lrr resistance protein	-	5e-1	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	Ptp.6193.1.S1_at	CV249273	hypothetical protein	-	1e-19	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	Ptp.4294.1.S1_at	DN499365	hypothetical protein	-	4e-13	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.94	PtpAffx.49746.1.A1_at	CV226295	hypothetical protein	-	4e-57	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.97	Ptp.4346.1.S1_at	CV272072	hypothetical protein	-	1e-10	At3g46430	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.6819.1.A1_x_at	CV252798	hypothetical protein	-	2e-2	At4g18260	cytochrome B561-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	Ptp.4510.1.S1_at	CV261413	hypothetical protein	-	1e-8	At1g14140	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	Ptp.2347.1.A1_x_at	CV280648	hypothetical protein	-	1e-140	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.207761.1.S1_at	pmrna15442	hypothetical protein	-	3e-17	At5g05570	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.155706.1.S1_at	CF230473	hypothetical protein	-	2e-61	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.89	PtpAffx.218247.1.S1_s_at	pmrna33799	hypothetical protein	-	2e+0	At3g43682	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	PtpAffx.5850.1.A1_x_at	CV275476	hypothetical protein	-	1e+0	At1g56060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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