Co-expression analysis

Gene ID	PtpAffx.224256.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g01810: protein transport protein-related (HF=4e-53)
Module size	6 genes
NF	0.27
%ile	47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.96	PtpAffx.224256.1.S1_s_at	pmrna42648	hypothetical protein	-	4e-53	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.200730.1.S1_s_at	pmrna1405	hypothetical protein	-	6e+0	At3g04590	DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	PtpAffx.1257.4.S1_a_at	CX180448	hypothetical protein	-	2e-30	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	PtpAffx.138169.1.S1_at	BI129010	hypothetical protein	-	2e-26	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.96	PtpAffx.224986.1.S1_at	pmrna43947	hypothetical protein	-	2e-90	At1g17980	nucleotidyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.96	PtpAffx.206243.1.S1_s_at	pmrna12386	hypothetical protein	-	8e-19	At5g02310	PRT6 (PROTEOLYSIS 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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