Co-expression analysis

Gene ID	PtpAffx.224210.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g26380: FAD-binding domain-containing protein (HF=3e-9)
Module size	31 genes
NF	0.36
%ile	62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.72	PtpAffx.224210.1.S1_s_at	pmrna42545	hypothetical protein	-	3e-9	At1g26380	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.87	PtpAffx.206384.1.S1_at	pmrna12680	hypothetical protein	-	3e-18	At5g56960	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.86	PtpAffx.224351.1.S1_at	pmrna42817	hypothetical protein	-	1e-3	At1g61610	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.88	Ptp.3031.2.A1_at	DN484744	-	-	4e+0	At3g05500	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.86	PtpAffx.221187.1.S1_at	pmrna37870	hypothetical protein	-	6e-2	At5g42930	triacylglycerol lipase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.88	PtpAffx.54148.1.A1_at	BI124202	hypothetical protein	-	7e-8	At4g30900	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.87	PtpAffx.153422.1.A1_at	CV257794	-	-	2e-1	At3g22240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.84	PtpAffx.200813.1.S1_at	pmrna1592	white-brown-complex ABC transporter family	-	3e-10	At1g51460	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.202233.1.S1_at	pmrna4481	hypothetical protein	-	1e+0	At1g10417	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.205724.1.S1_s_at	pmrna11296	hypothetical protein	-	2e+0	At4g30180	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.85	PtpAffx.222296.1.S1_at	pmrna39613	hypothetical protein	-	2e-1	At3g20390	endoribonuclease L-PSP family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.92	PtpAffx.151801.1.A1_at	CV243964	hypothetical protein	-	2e+0	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.91	PtpAffx.208375.1.S1_at	pmrna16658	cytochrome P450	-	1e-2	At5g10600	CYP81K2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.85	PtpAffx.208918.1.S1_at	pmrna17684	hypothetical protein	-	5e-2	At3g62650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.89	PtpAffx.16539.1.A1_s_at	BP934558	-	-	4e+0	At3g05500	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.88	PtpAffx.215202.1.S1_at	pmrna29253	-	-	3e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.90	PtpAffx.121010.1.A1_at	CV257240	hypothetical protein	-	3e-2	At3g59080	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.85	PtpAffx.204851.1.S1_at	pmrna9585	hypothetical protein	-	1e-5	At1g30370	lipase class 3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.89	PtpAffx.225232.1.S1_at	pmrna44424	hypothetical protein	-	2e-5	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.91	PtpAffx.221860.1.S1_s_at	pmrna38953	cytochrome P450 /// cytochrome P450	-	3e-3	At4g37430	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.89	PtpAffx.209542.1.S1_x_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.84	PtpAffx.206380.1.S1_at	pmrna12672	hypothetical protein	-	2e-13	At5g57010	calmodulin-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.211624.1.S1_at	pmrna22781	hypothetical protein	-	6e-1	At3g11840	PUB24 (PLANT U-BOX 24)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.86	PtpAffx.207446.1.S1_at	pmrna14786	-	-	2e-23	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.90	PtpAffx.204500.1.S1_at	pmrna8828	lysine/histidine transporter	-	2e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.86	PtpAffx.2212.1.A1_at	CA826370	hypothetical protein	-	1e+0	At5g03920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.83	PtpAffx.223441.1.S1_at	pmrna41453	hypothetical protein	-	2e-7	At4g08500	MEKK1 (MAP KINASE KINASE KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.87	PtpAffx.225845.1.S1_s_at	pmrna45468	hypothetical protein	-	4e-26	At1g11300	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.90	PtpAffx.12609.1.S1_at	AJ779668	-	-	5e+0	Atmg01040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.74	PtpAffx.85524.1.S1_s_at	DN497067	hypothetical protein	-	3e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.76	PtpAffx.218821.1.S1_x_at	pmrna34559	hypothetical protein	-	2e+0	At4g05000	VPS28-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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