Co-expression analysis

Gene ID PtpAffx.224210.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g26380: FAD-binding domain-containing protein (HF=3e-9)
Module size 31 genes
NF 0.36
%ile 62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.72PtpAffx.224210.1.S1_s_atpmrna42545hypothetical protein-3e-9At1g26380FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6388.10.87PtpAffx.206384.1.S1_atpmrna12680hypothetical protein-3e-18At5g56960basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5380.50.86PtpAffx.224351.1.S1_atpmrna42817hypothetical protein-1e-3At1g61610S-locus lectin protein kinase family proteinO.I.H.G.S.X.
0.5279.40.88Ptp.3031.2.A1_atDN484744--4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.5178.90.86PtpAffx.221187.1.S1_atpmrna37870hypothetical protein-6e-2At5g42930triacylglycerol lipaseO.I.H.G.S.X.
0.4673.70.88PtpAffx.54148.1.A1_atBI124202hypothetical protein-7e-8At4g30900-O.I.H.G.S.X.
0.4167.70.87PtpAffx.153422.1.A1_atCV257794--2e-1At3g22240unknown proteinO.I.H.G.S.X.
0.4167.70.84PtpAffx.200813.1.S1_atpmrna1592white-brown-complex ABC transporter family-3e-10At1g51460ABC transporter family proteinO.I.H.G.S.X.
0.4067.00.88PtpAffx.202233.1.S1_atpmrna4481hypothetical protein-1e+0At1g10417-O.I.H.G.S.X.
0.4067.00.91PtpAffx.205724.1.S1_s_atpmrna11296hypothetical protein-2e+0At4g30180transcription factor/ transcription regulatorO.I.H.G.S.X.
0.4067.00.85PtpAffx.222296.1.S1_atpmrna39613hypothetical protein-2e-1At3g20390endoribonuclease L-PSP family proteinO.I.H.G.S.X.
0.3964.60.92PtpAffx.151801.1.A1_atCV243964hypothetical protein-2e+0At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.3964.60.91PtpAffx.208375.1.S1_atpmrna16658cytochrome P450-1e-2At5g10600CYP81K2O.I.H.G.S.X.
0.3762.30.85PtpAffx.208918.1.S1_atpmrna17684hypothetical protein-5e-2At3g62650unknown proteinO.I.H.G.S.X.
0.3762.30.89PtpAffx.16539.1.A1_s_atBP934558--4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.3559.70.88PtpAffx.215202.1.S1_atpmrna29253--3e-1At2g32200unknown proteinO.I.H.G.S.X.
0.3559.70.90PtpAffx.121010.1.A1_atCV257240hypothetical protein-3e-2At3g59080aspartyl protease family proteinO.I.H.G.S.X.
0.3559.70.85PtpAffx.204851.1.S1_atpmrna9585hypothetical protein-1e-5At1g30370lipase class 3 family proteinO.I.H.G.S.X.
0.3458.30.89PtpAffx.225232.1.S1_atpmrna44424hypothetical protein-2e-5At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.3458.30.91PtpAffx.221860.1.S1_s_atpmrna38953cytochrome P450 /// cytochrome P450-3e-3At4g37430CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)O.I.H.G.S.X.
0.3458.30.89PtpAffx.209542.1.S1_x_atpmrna18907hypothetical protein-5e-1At2g32200unknown proteinO.I.H.G.S.X.
0.3357.50.84PtpAffx.206380.1.S1_atpmrna12672hypothetical protein-2e-13At5g57010calmodulin-binding family proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.211624.1.S1_atpmrna22781hypothetical protein-6e-1At3g11840PUB24 (PLANT U-BOX 24)O.I.H.G.S.X.
0.3153.70.86PtpAffx.207446.1.S1_atpmrna14786--2e-23At5g10530lectin protein kinase, putativeO.I.H.G.S.X.
0.3052.00.90PtpAffx.204500.1.S1_atpmrna8828lysine/histidine transporter-2e-7At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.2950.50.86PtpAffx.2212.1.A1_atCA826370hypothetical protein-1e+0At5g03920unknown proteinO.I.H.G.S.X.
0.2747.10.83PtpAffx.223441.1.S1_atpmrna41453hypothetical protein-2e-7At4g08500MEKK1 (MAP KINASE KINASE KINASE 1)O.I.H.G.S.X.
0.2747.10.87PtpAffx.225845.1.S1_s_atpmrna45468hypothetical protein-4e-26At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.2441.80.90PtpAffx.12609.1.S1_atAJ779668--5e+0Atmg01040-O.I.H.G.S.X.
0.2340.50.74PtpAffx.85524.1.S1_s_atDN497067hypothetical protein-3e-1At5g62490ATHVA22BO.I.H.G.S.X.
0.1626.90.76PtpAffx.218821.1.S1_x_atpmrna34559hypothetical protein-2e+0At4g05000VPS28-2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.293.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage