Co-expression analysis

Gene ID PtpAffx.224198.1.S1_at
Gene name glutamate-gated kainate-type ion channel receptor subunit GluR5
Homology with ArabidopsisSimilar to At2g19480: NAP1 (HF=1e+0)
Module size 6 genes
NF 0.15
%ile 29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.82PtpAffx.224198.1.S1_atpmrna42514glutamate-gated kainate-type ion channel receptor subunit GluR5-1e+0At2g19480NAP1O.I.H.G.S.X.
0.4067.00.83PtpAffx.41708.1.S1_atCV279789--1e-4At3g22560GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2950.50.85PtpAffx.224168.1.S1_s_atpmrna42446hypothetical protein-4e-8At1g08440-O.I.H.G.S.X.
0.2034.60.82Ptp.7371.1.S1_atDN495229--3e+0At2g17960unknown proteinO.I.H.G.S.X.
0.1118.10.82PtpAffx.213426.1.S1_atpmrna26254hypothetical protein-1e-1At3g26770short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.069.80.82Ptp.5756.2.S1_atCV257200--1e-31At3g54840ARA6O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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