CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.224196.1.S1_x_at

Gene name glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5
Homology with Arabidopsis Similar to At3g26420: ATRZ-1A (HF=3e-1)

Module size 36 genes

NF 0.08

%ile 16.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 97.4 0.83 PtpAffx.224196.1.S1_x_at pmrna42512 glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 - 3e-1 At3g26420 ATRZ-1A O.I. H.G. S.X.
0.20 34.6 0.88 PtpAffx.210166.1.S1_at pmrna20031 hypothetical protein - 1e-1 At4g13200 unknown protein O.I. H.G. S.X.
0.14 23.5 0.92 Ptp.3092.1.S1_at CK093286 hypothetical protein - 2e-34 At1g28240 unknown protein O.I. H.G. S.X.
0.13 21.6 0.86 PtpAffx.249.599.A1_s_at CV253813 hypothetical protein - 1e+0 At5g59613 unknown protein O.I. H.G. S.X.
0.13 21.6 0.93 Ptp.4641.1.S1_at BI131249 hypothetical protein - 2e-5 At1g65520 ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1) O.I. H.G. S.X.
0.12 19.6 0.89 PtpAffx.108063.1.A1_at CV255665 - - 8e-1 At2g21080 unknown protein O.I. H.G. S.X.
0.11 18.1 0.89 PtpAffx.8549.4.S1_at CV226406 hypothetical protein - 7e-2 At3g48140 senescence-associated protein, putative O.I. H.G. S.X.
0.11 18.1 0.88 PtpAffx.205232.1.S1_at pmrna10374 hypothetical protein - 3e-1 At4g29930 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.11 18.1 0.90 PtpAffx.81803.1.A1_at CV272805 hypothetical protein - 3e-7 At1g64230 ubiquitin-conjugating enzyme, putative O.I. H.G. S.X.
0.10 16.3 0.92 Ptp.5673.1.S1_at BU884119 hypothetical protein - 4e-38 At5g47080 CKB1 O.I. H.G. S.X.
0.10 16.3 0.93 PtpAffx.141994.1.S1_at CX186922 hypothetical protein - 1e-6 At5g56760 ATSERAT1 O.I. H.G. S.X.
0.10 16.3 0.94 PtpAffx.220978.1.S1_s_at pmrna37486 hypothetical protein - 8e-33 At3g17770 dihydroxyacetone kinase family protein O.I. H.G. S.X.
0.10 16.3 0.86 PtpAffx.122818.1.S1_at CK104754 - - 5e+0 At2g41600 - O.I. H.G. S.X.
0.09 14.6 0.92 PtpAffx.202443.1.S1_at pmrna4893 - - 3e+0 At5g16950 unknown protein O.I. H.G. S.X.
0.09 14.6 0.87 PtpAffx.207849.1.S1_at pmrna15583 hypothetical protein - 7e-7 At3g19850 phototropic-responsive NPH3 family protein O.I. H.G. S.X.
0.09 14.6 0.92 PtpAffx.214381.1.S1_at pmrna27986 hypothetical protein - 4e-6 At1g59720 CRR28 (CHLORORESPIRATORY REDUCTION28) O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.89966.1.S1_a_at DN490981 hypothetical protein - 5e-10 At2g37860 LCD1 (LOWER CELL DENSITY 1) O.I. H.G. S.X.
0.08 12.9 0.93 PtpAffx.207776.1.S1_s_at pmrna15461 hypothetical protein - 1e-5 At5g05520 outer membrane OMP85 family protein O.I. H.G. S.X.
0.08 12.9 0.90 PtpAffx.113703.1.S1_at DN493001 hypothetical protein - 3e-36 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.08 12.9 0.89 PtpAffx.17839.2.A1_s_at CV254740 hypothetical protein - 2e-22 At5g40200 DegP9 (DegP protease 9) O.I. H.G. S.X.
0.08 12.9 0.91 PtpAffx.205553.1.S1_at pmrna10984 hypothetical protein - 2e-28 At1g77290 tetrachloro-p-hydroquinone reductive dehalogenase-related O.I. H.G. S.X.
0.07 11.6 0.88 PtpAffx.220314.1.S1_at pmrna36684 hypothetical protein - 6e-1 At5g62750 unknown protein O.I. H.G. S.X.
0.07 11.6 0.89 PtpAffx.213011.1.S1_at pmrna25442 hypothetical protein - 2e-12 At3g48890 ATMP2 O.I. H.G. S.X.
0.07 11.6 0.91 PtpAffx.200422.1.S1_at pmrna847 hypothetical protein - 1e+0 At1g23140 C2 domain-containing protein O.I. H.G. S.X.
0.07 11.6 0.90 PtpAffx.144806.1.S1_s_at DN501133 hypothetical protein - 1e+0 At2g02440 unknown protein O.I. H.G. S.X.
0.07 11.6 0.90 PtpAffx.214754.1.S1_at pmrna28589 hypothetical protein - 2e+1 At4g21780 unknown protein O.I. H.G. S.X.
0.06 9.8 0.87 PtpAffx.223113.1.S1_at pmrna40942 hypothetical protein - 2e+0 At4g36740 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) O.I. H.G. S.X.
0.06 9.8 0.94 Ptp.1861.1.S1_x_at CN549959 hypothetical protein - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.06 9.8 0.91 PtpAffx.213023.1.S1_at pmrna25471 hypothetical protein - 7e-7 At4g25270 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.05 8.3 0.92 PtpAffx.209204.1.S1_at pmrna18205 hypothetical protein - 3e-23 At1g79350 EMB1135 (embryo defective 1135) O.I. H.G. S.X.
0.05 8.3 0.91 PtpAffx.201955.1.S1_x_at pmrna3898 hypothetical protein - 2e+0 At2g45403 unknown protein O.I. H.G. S.X.
0.04 6.9 0.92 PtpAffx.206338.1.S1_at pmrna12583 hypothetical protein - 2e-5 At3g56550 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.156460.1.S1_at CK115873 - - 2e+0 At4g13760 polygalacturonase O.I. H.G. S.X.
0.04 6.9 0.92 PtpAffx.202148.1.S1_at pmrna4297 hypothetical protein - 1e-3 At3g56830 unknown protein O.I. H.G. S.X.
0.03 5.2 0.89 PtpAffx.96942.1.S1_at CK107034 hypothetical protein - 1e+0 At2g17040 anac036 (Arabidopsis NAC domain containing protein 36) O.I. H.G. S.X.
0.03 5.2 0.90 PtpAffx.225762.1.S1_s_at pmrna45341 hypothetical protein - 1e-8 At4g23230 protein kinase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	97.4	0.83	PtpAffx.224196.1.S1_x_at	pmrna42512	glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5	-	3e-1	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.
0.20	34.6	0.88	PtpAffx.210166.1.S1_at	pmrna20031	hypothetical protein	-	1e-1	At4g13200	unknown protein	O.I.	H.G.	S.X.
0.14	23.5	0.92	Ptp.3092.1.S1_at	CK093286	hypothetical protein	-	2e-34	At1g28240	unknown protein	O.I.	H.G.	S.X.
0.13	21.6	0.86	PtpAffx.249.599.A1_s_at	CV253813	hypothetical protein	-	1e+0	At5g59613	unknown protein	O.I.	H.G.	S.X.
0.13	21.6	0.93	Ptp.4641.1.S1_at	BI131249	hypothetical protein	-	2e-5	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	O.I.	H.G.	S.X.
0.12	19.6	0.89	PtpAffx.108063.1.A1_at	CV255665	-	-	8e-1	At2g21080	unknown protein	O.I.	H.G.	S.X.
0.11	18.1	0.89	PtpAffx.8549.4.S1_at	CV226406	hypothetical protein	-	7e-2	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.
0.11	18.1	0.88	PtpAffx.205232.1.S1_at	pmrna10374	hypothetical protein	-	3e-1	At4g29930	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.11	18.1	0.90	PtpAffx.81803.1.A1_at	CV272805	hypothetical protein	-	3e-7	At1g64230	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.
0.10	16.3	0.92	Ptp.5673.1.S1_at	BU884119	hypothetical protein	-	4e-38	At5g47080	CKB1	O.I.	H.G.	S.X.
0.10	16.3	0.93	PtpAffx.141994.1.S1_at	CX186922	hypothetical protein	-	1e-6	At5g56760	ATSERAT1	O.I.	H.G.	S.X.
0.10	16.3	0.94	PtpAffx.220978.1.S1_s_at	pmrna37486	hypothetical protein	-	8e-33	At3g17770	dihydroxyacetone kinase family protein	O.I.	H.G.	S.X.
0.10	16.3	0.86	PtpAffx.122818.1.S1_at	CK104754	-	-	5e+0	At2g41600	-	O.I.	H.G.	S.X.
0.09	14.6	0.92	PtpAffx.202443.1.S1_at	pmrna4893	-	-	3e+0	At5g16950	unknown protein	O.I.	H.G.	S.X.
0.09	14.6	0.87	PtpAffx.207849.1.S1_at	pmrna15583	hypothetical protein	-	7e-7	At3g19850	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.
0.09	14.6	0.92	PtpAffx.214381.1.S1_at	pmrna27986	hypothetical protein	-	4e-6	At1g59720	CRR28 (CHLORORESPIRATORY REDUCTION28)	O.I.	H.G.	S.X.
0.08	12.9	0.90	PtpAffx.89966.1.S1_a_at	DN490981	hypothetical protein	-	5e-10	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.
0.08	12.9	0.93	PtpAffx.207776.1.S1_s_at	pmrna15461	hypothetical protein	-	1e-5	At5g05520	outer membrane OMP85 family protein	O.I.	H.G.	S.X.
0.08	12.9	0.90	PtpAffx.113703.1.S1_at	DN493001	hypothetical protein	-	3e-36	At2g14170	ALDH6B2	O.I.	H.G.	S.X.
0.08	12.9	0.89	PtpAffx.17839.2.A1_s_at	CV254740	hypothetical protein	-	2e-22	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.
0.08	12.9	0.91	PtpAffx.205553.1.S1_at	pmrna10984	hypothetical protein	-	2e-28	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	O.I.	H.G.	S.X.
0.07	11.6	0.88	PtpAffx.220314.1.S1_at	pmrna36684	hypothetical protein	-	6e-1	At5g62750	unknown protein	O.I.	H.G.	S.X.
0.07	11.6	0.89	PtpAffx.213011.1.S1_at	pmrna25442	hypothetical protein	-	2e-12	At3g48890	ATMP2	O.I.	H.G.	S.X.
0.07	11.6	0.91	PtpAffx.200422.1.S1_at	pmrna847	hypothetical protein	-	1e+0	At1g23140	C2 domain-containing protein	O.I.	H.G.	S.X.
0.07	11.6	0.90	PtpAffx.144806.1.S1_s_at	DN501133	hypothetical protein	-	1e+0	At2g02440	unknown protein	O.I.	H.G.	S.X.
0.07	11.6	0.90	PtpAffx.214754.1.S1_at	pmrna28589	hypothetical protein	-	2e+1	At4g21780	unknown protein	O.I.	H.G.	S.X.
0.06	9.8	0.87	PtpAffx.223113.1.S1_at	pmrna40942	hypothetical protein	-	2e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	O.I.	H.G.	S.X.
0.06	9.8	0.94	Ptp.1861.1.S1_x_at	CN549959	hypothetical protein	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.
0.06	9.8	0.91	PtpAffx.213023.1.S1_at	pmrna25471	hypothetical protein	-	7e-7	At4g25270	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.05	8.3	0.92	PtpAffx.209204.1.S1_at	pmrna18205	hypothetical protein	-	3e-23	At1g79350	EMB1135 (embryo defective 1135)	O.I.	H.G.	S.X.
0.05	8.3	0.91	PtpAffx.201955.1.S1_x_at	pmrna3898	hypothetical protein	-	2e+0	At2g45403	unknown protein	O.I.	H.G.	S.X.
0.04	6.9	0.92	PtpAffx.206338.1.S1_at	pmrna12583	hypothetical protein	-	2e-5	At3g56550	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.04	6.9	0.89	PtpAffx.156460.1.S1_at	CK115873	-	-	2e+0	At4g13760	polygalacturonase	O.I.	H.G.	S.X.
0.04	6.9	0.92	PtpAffx.202148.1.S1_at	pmrna4297	hypothetical protein	-	1e-3	At3g56830	unknown protein	O.I.	H.G.	S.X.
0.03	5.2	0.89	PtpAffx.96942.1.S1_at	CK107034	hypothetical protein	-	1e+0	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	O.I.	H.G.	S.X.
0.03	5.2	0.90	PtpAffx.225762.1.S1_s_at	pmrna45341	hypothetical protein	-	1e-8	At4g23230	protein kinase family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 92.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6 84.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.224196.1.S1_x_at
Gene name	glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5 /// glutamate-gated kainate-type ion channel receptor subunit GluR5
Homology with Arabidopsis	Similar to At3g26420: ATRZ-1A (HF=3e-1)
Module size	36 genes
NF	0.08
%ile	16.8

Co-expression analysis

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays