Co-expression analysis

Gene ID PtpAffx.224186.1.S1_at
Gene name tir-nbs-lrr resistance protein
Homology with ArabidopsisSimilar to At2g03030: Toll-Interleukin-Resistance (TIR) domain-containing protein (HF=5e-2)
Module size 11 genes
NF 0.29
%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.89PtpAffx.224186.1.S1_atpmrna42489tir-nbs-lrr resistance protein-5e-2At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5380.50.89PtpAffx.108254.1.A1_atCV247853hypothetical protein-9e-1At3g07425unknown proteinO.I.H.G.S.X.
0.4067.00.90PtpAffx.102151.1.A1_atCV235637hypothetical protein-4e+0At2g17850-O.I.H.G.S.X.
0.2950.50.90PtpAffx.212325.1.S1_s_atpmrna24169--4e-1At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.2543.60.93Ptp.6396.1.S1_atDN492082hypothetical protein-4e-8At4g34700complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.2340.50.91PtpAffx.54801.2.A1_atCV257003hypothetical protein-2e-1At3g1874060S ribosomal protein L30 (RPL30C)O.I.H.G.S.X.
0.2238.30.91Ptp.3907.1.S1_atBU866164--3e-1At3g18700-O.I.H.G.S.X.
0.2136.50.91PtpAffx.225153.1.S1_atpmrna44288--2e-3At5g46260disease resistance protein (TIR-NBS-LRR class), putativeO.I.H.G.S.X.
0.2034.60.92PtpAffx.7042.1.S1_atBI123470--2e+0At5g40382cytochrome-c oxidaseO.I.H.G.S.X.
0.1830.80.91PtpAffx.218039.1.S1_atpmrna33551hypothetical protein-1e-8At2g37680-O.I.H.G.S.X.
0.1016.30.92PtpAffx.7318.1.A1_atCK091154--3e+0At3g29020MYB110 (myb domain protein 110)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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