Co-expression analysis

Gene ID PtpAffx.224180.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=1e-4)
Module size 6 genes
NF 0.13
%ile 25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.88PtpAffx.224180.1.S1_atpmrna42478hypothetical protein-1e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.6791.10.88PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.5582.20.88PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.3153.70.91PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)O.I.H.G.S.X.
0.058.30.87PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.
0.035.20.87PtpAffx.212032.1.S1_atpmrna23624hypothetical protein-1e-1At1g29720protein kinase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4471.90.85PtpAffx.213628.1.S1_s_atpmrna26618hypothetical protein-1e-4At5g01380transcription factorO.I.H.G.S.X.
0.3661.60.81PtpAffx.225877.1.S1_s_atpmrna45521hypothetical protein-9e-1At1g21280unknown proteinO.I.H.G.S.X.
0.3559.70.80PtpAffx.204642.1.S1_s_atpmrna9128hypothetical protein-6e-4At3g18950transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2543.60.88PtpAffx.214387.1.S1_atpmrna27998hypothetical protein-7e-1At4g16510YbaK/prolyl-tRNA synthetase-relatedO.I.H.G.S.X.
0.1729.10.88PtpAffx.161922.1.A1_s_atCK094074autoinhibited calcium ATPase /// autoinhibited calcium ATPase-3e+0At4g17453unknown proteinO.I.H.G.S.X.
0.1729.10.91PtpAffx.205723.1.S1_x_atpmrna11295hypothetical protein-2e-5At3g22930calmodulin, putativeO.I.H.G.S.X.
0.1525.30.84PtpAffx.151837.1.A1_atBP934132hypothetical protein-3e-1At5g10970zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.1321.60.89PtpAffx.204075.1.S1_s_atpmrna8049hypothetical protein-8e-3At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.1118.10.87PtpAffx.104157.1.S1_atCA823526--2e+0At2g47690NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.1016.30.87PtpAffx.217345.1.S1_s_atpmrna32563hypothetical protein-2e-9At4g22030F-box family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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