Co-expression analysis

Gene ID PtpAffx.224180.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=1e-4)
Module size 6 genes
NF 0.13
%ile 25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.88PtpAffx.224180.1.S1_atpmrna42478hypothetical protein-1e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.6791.10.88PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.5582.20.88PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.3153.70.91PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)O.I.H.G.S.X.
0.058.30.87PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.
0.035.20.87PtpAffx.212032.1.S1_atpmrna23624hypothetical protein-1e-1At1g29720protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0478200, orthologous to the query gene, PtpAffx.224180.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5371.3Os12g0478200At5g13200-GRAM domain containing protein4e-4At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.7391.1Os07g0154100At5g13200-The start codon is not identified.3e-4At3g14440NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)O.I.H.G.S.X.
0.6787.2Os07g0687900At5g13200-WSI76 protein induced by water stress4e-24At1g09350AtGolS3 (Arabidopsis thaliana galactinol synthase 3)O.I.H.G.S.X.
0.6787.2Os09g0325700At5g13200-Protein phosphatase 2C (EC 3.1.3.16) (PP2C)7e-1At5g06210RNA-binding protein, putativeO.I.H.G.S.X.
0.5068.0Os03g0125100At5g13200-Beta-carotene hydroxylase1e-11At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.5068.0Os03g0268600At5g13200-Protein phosphatase type 2C2e-1At5g59220protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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