CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.224180.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=1e-4)

Module size 6 genes

NF 0.13

%ile 25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.88 PtpAffx.224180.1.S1_at pmrna42478 hypothetical protein - 1e-4 At5g13200 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.67 91.1 0.88 PtpAffx.208173.1.S1_at pmrna16258 autoinhibited calcium ATPase - 7e-55 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) O.I. H.G. S.X.
0.55 82.2 0.88 PtpAffx.208173.1.S1_x_at pmrna16258 autoinhibited calcium ATPase - 7e-55 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) O.I. H.G. S.X.
0.31 53.7 0.91 PtpAffx.208983.1.S1_s_at pmrna17803 hypothetical protein - 3e-2 At1g68765 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) O.I. H.G. S.X.
0.05 8.3 0.87 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.03 5.2 0.87 PtpAffx.212032.1.S1_at pmrna23624 hypothetical protein - 1e-1 At1g29720 protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8 92.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g13200, orthologous to the query gene, PtpAffx.224180.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.33 38.1 At5g13200 831159 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.80 89.8 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. H.G. S.X.
0.57 73.8 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. H.G. S.X.
0.42 53.9 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. H.G. S.X.
0.22 17.5 At2g26560 817197 PLA2A (PHOSPHOLIPASE A 2A) encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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