Co-expression analysis

Gene ID PtpAffx.224180.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=1e-4)
Module size 6 genes
NF 0.13
%ile 25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.88PtpAffx.224180.1.S1_atpmrna42478hypothetical protein-1e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.6791.10.88PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.5582.20.88PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.3153.70.91PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)O.I.H.G.S.X.
0.058.30.87PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.
0.035.20.87PtpAffx.212032.1.S1_atpmrna23624hypothetical protein-1e-1At1g29720protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g13200, orthologous to the query gene, PtpAffx.224180.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3338.1At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.8089.8At2g18680816383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.H.G.S.X.
0.5773.8At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.4253.9At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.H.G.S.X.
0.2217.5At2g26560817197PLA2A (PHOSPHOLIPASE A 2A)encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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