Co-expression analysis

Gene ID PtpAffx.224105.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g23750: DNA-binding protein-related (HF=8e-1)
Module size 23 genes
NF 0.10
%ile 19.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8196.10.84PtpAffx.224105.1.S1_s_atpmrna42343hypothetical protein-8e-1At1g23750DNA-binding protein-relatedO.I.H.G.S.X.
0.2238.30.86PtpAffx.11610.1.S1_atCV259218--7e-18At2g06010ORG4 (OBP3-RESPONSIVE GENE 4)O.I.H.G.S.X.
0.2034.60.88PtpAffx.224666.1.S1_atpmrna43432hypothetical protein-9e-7At3g55550lectin protein kinase, putativeO.I.H.G.S.X.
0.1729.10.88PtpAffx.101857.1.A1_atCV248457--2e-42Atcg01010-O.I.H.G.S.X.
0.1729.10.89PtpAffx.212876.1.S1_atpmrna25201hypothetical protein-5e-1At5g53610glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.1626.90.90Ptp.4781.1.S1_atCV236553p-type ATPase transporter /// p-type ATPase transporter-3e-30At5g23630ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy proteinO.I.H.G.S.X.
0.1626.90.89PtpAffx.103505.1.S1_atCV278531hypothetical protein-3e-2At1g17455ELF4-L4 (ELF4-Like 4)O.I.H.G.S.X.
0.1525.30.90PtpAffx.159255.1.A1_atCV281074equilibrative nucleoside transporter-4e-1At1g61630equilibrative nucleoside transporter, putative (ENT7)O.I.H.G.S.X.
0.1525.30.90PtpAffx.219268.1.S1_s_atpmrna35136hypothetical protein-1e-10At5g25880ATNADP-ME3 (NADP-malic enzyme 3)O.I.H.G.S.X.
0.1423.50.89PtpAffx.84025.1.S1_atCX186396hypothetical protein-2e+0At5g14330unknown proteinO.I.H.G.S.X.
0.1321.60.90PtpAffx.39457.1.A1_a_atCK096675hypothetical protein-6e-22At5g48370thioesterase family proteinO.I.H.G.S.X.
0.1219.60.92PtpAffx.102687.2.A1_atCV234495hypothetical protein-2e-4At3g57950unknown proteinO.I.H.G.S.X.
0.1016.30.89PtpAffx.6809.1.S1_atCV283022hypothetical protein-1e-1At4g32870unknown proteinO.I.H.G.S.X.
0.1016.30.93PtpAffx.203886.1.S1_atpmrna7674hypothetical protein-3e-5At1g28250unknown proteinO.I.H.G.S.X.
0.1016.30.91PtpAffx.29571.1.S1_atCV259687--2e-6At3g10670ATNAP7O.I.H.G.S.X.
0.0914.60.90PtpAffx.134171.1.A1_atCV245435hypothetical protein-1e+0At2g21725-O.I.H.G.S.X.
0.0812.90.88Ptp.704.2.S1_atCV257555hypothetical protein-4e-1At5g15600SP1L4 (SPIRAL1-LIKE4)O.I.H.G.S.X.
0.0711.60.90PtpAffx.94607.1.A1_atCV279825hypothetical protein-1e-2At2g03060DNA binding / transcription factorO.I.H.G.S.X.
0.0711.60.92PtpAffx.206316.1.S1_atpmrna12538hypothetical protein-7e-4At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.0711.60.90PtpAffx.35447.1.S1_atCV258793hypothetical protein-2e+0At3g16190isochorismatase hydrolase family proteinO.I.H.G.S.X.
0.046.90.87PtpAffx.9973.2.S1_atCV255131hypothetical protein-4e-13At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.31484.3.A1_atCV270227hypothetical protein-2e-5At3g11560unknown proteinO.I.H.G.S.X.
0.046.90.90PtpAffx.95031.1.A1_atBP936487hypothetical protein-2e-10At1g11880transferase, transferring hexosyl groupsO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.992.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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