Co-expression analysis

Gene ID	PtpAffx.22410.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g02290: zinc finger (C3HC4-type RING finger) family protein (HF=5e-29)
Module size	6 genes
NF	0.58
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.95	PtpAffx.22410.1.S1_at	CV272742	hypothetical protein	-	5e-29	At3g02290	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.145060.1.A1_at	CV249802	hypothetical protein	-	3e-23	At4g35500	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	Ptp.3882.1.S1_at	CV264407	hypothetical protein	-	2e-19	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.95	PtpAffx.10648.1.S1_a_at	CN519395	hypothetical protein	-	8e-74	At3g05580	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	Ptp.6966.1.S1_s_at	CV239698	-	-	4e-14	At5g14030	translocon-associated protein beta (TRAPB) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	Ptp.1463.3.A1_s_at	CV263405	hypothetical protein	-	1e-4	At4g19200	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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