Co-expression analysis

Gene ID PtpAffx.224082.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g61030: GR-RBP3 (glycine-rich RNA-binding protein 3) (HF=1e-2)
Module size 10 genes
NF 0.64
%ile 92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7292.70.85PtpAffx.224082.1.S1_x_atpmrna42319hypothetical protein-1e-2At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)O.I.H.G.S.X.
0.7493.80.86PtpAffx.219164.1.S1_atpmrna35006hypothetical protein-2e+1Atmg00840-O.I.H.G.S.X.
0.7493.80.86PtpAffx.208647.1.S1_atpmrna17166hypothetical protein-7e-7At1g13160SDA1 family proteinO.I.H.G.S.X.
0.6791.10.87PtpAffx.214632.1.S1_atpmrna28429hypothetical protein-4e+0At5g03510zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.6488.40.84PtpAffx.220458.1.S1_atpmrna36851hypothetical protein-7e+0At1g49170unknown proteinO.I.H.G.S.X.
0.6287.20.85PtpAffx.224029.1.S1_atpmrna42263hypothetical protein-1e+0At5g4152040S ribosomal protein S10 (RPS10B)O.I.H.G.S.X.
0.5683.90.86PtpAffx.205115.1.S1_atpmrna10125hypothetical protein-8e-1At4g32120galactosyltransferase family proteinO.I.H.G.S.X.
0.5582.20.87PtpAffx.222801.1.S1_atpmrna40461hypothetical protein-5e-1At3g22360AOX1BO.I.H.G.S.X.
0.5279.40.86Ptp.3190.3.A1_atCV229036--7e-1At1g50930unknown proteinO.I.H.G.S.X.
0.4673.70.86PtpAffx.217474.1.S1_atpmrna32753hypothetical protein-7e+0At3g18295unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
5.497.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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