CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.223909.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g76994: unknown protein (HF=6e-1)

Module size 36 genes

NF 0.18

%ile 33.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.88 PtpAffx.223909.1.S1_at pmrna42131 hypothetical protein - 6e-1 At1g76994 unknown protein O.I. H.G. S.X.
0.48 75.4 0.93 PtpAffx.7178.1.S1_at BU822573 - - 1e-2 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase O.I. H.G. S.X.
0.43 69.7 0.95 PtpAffx.26054.1.A1_at CK095900 - - 4e-1 At1g59710 - O.I. H.G. S.X.
0.42 68.6 0.95 Ptp.3098.1.S1_at BU824488 hypothetical protein - 2e-37 At3g11200 AL2 (ALFIN-LIKE 2) O.I. H.G. S.X.
0.35 59.7 0.91 PtpAffx.3977.2.S1_at DN501450 - - 3e+0 At5g42030 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) O.I. H.G. S.X.
0.31 53.7 0.95 PtpAffx.152314.1.A1_at CV241611 hypothetical protein - 9e-14 At5g62820 integral membrane protein, putative O.I. H.G. S.X.
0.31 53.7 0.95 PtpAffx.26220.1.A1_at CV257816 - - 4e-1 At4g11250 AGL52 O.I. H.G. S.X.
0.31 53.7 0.95 PtpAffx.3525.2.S1_a_at CV257740 hypothetical protein - 6e-9 At1g55080 unknown protein O.I. H.G. S.X.
0.30 52.0 0.96 PtpAffx.132141.1.S1_at DN498235 hypothetical protein - 6e-1 At1g72141 unknown protein O.I. H.G. S.X.
0.29 50.5 0.94 PtpAffx.144674.1.S1_s_at CV264075 hypothetical protein - 2e+0 At1g51950 IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) O.I. H.G. S.X.
0.29 50.5 0.93 Ptp.4084.1.S1_at DN484681 - - 5e-1 At5g48655 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 50.5 0.95 PtpAffx.86364.1.A1_a_at CK097933 hypothetical protein - 7e-2 At1g79260 unknown protein O.I. H.G. S.X.
0.27 47.1 0.94 PtpAffx.6955.4.S1_a_at DN491993 hypothetical protein - 1e+0 At5g39700 MYB89 (myb domain protein 89) O.I. H.G. S.X.
0.27 47.1 0.95 Ptp.7719.1.A1_at CV267988 hypothetical protein - 4e-11 At1g05640 ankyrin repeat family protein O.I. H.G. S.X.
0.26 45.2 0.96 PtpAffx.22156.1.A1_a_at CV255460 - - 2e-12 At4g04950 thioredoxin family protein O.I. H.G. S.X.
0.26 45.2 0.95 PtpAffx.86232.1.S1_at CV268478 - - 2e-3 At2g46060 transmembrane protein-related O.I. H.G. S.X.
0.25 43.6 0.95 PtpAffx.158876.1.S1_at BU809969 hypothetical protein - 5e-2 At2g19270 - O.I. H.G. S.X.
0.24 41.8 0.95 PtpAffx.115188.1.A1_at CV229892 hypothetical protein - 2e+0 At5g27945 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.24 41.8 0.96 Ptp.4370.1.S1_s_at BU815574 hypothetical protein - 3e+0 At5g60810 unknown protein O.I. H.G. S.X.
0.20 34.6 0.95 PtpAffx.21910.1.S1_at CV259421 hypothetical protein - 2e-18 At5g22350 ELM1 (ELONGATED MITOCHONDRIA 1) O.I. H.G. S.X.
0.19 32.7 0.94 PtpAffx.18767.1.A1_at CV230628 hypothetical protein - 1e+0 At3g53900 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative O.I. H.G. S.X.
0.15 25.3 0.94 PtpAffx.115633.1.S1_at CX182054 hypothetical protein - 3e-2 At3g59910 - O.I. H.G. S.X.
0.14 23.5 0.94 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.
0.14 23.5 0.95 PtpAffx.37317.1.A1_a_at CV246331 hypothetical protein - 2e-30 At5g07120 SNX2b (SORTING NEXIN 2b) O.I. H.G. S.X.
0.13 21.6 0.95 Ptp.537.1.S1_at BU836563 hypothetical protein - 4e-45 At5g57280 methyltransferase O.I. H.G. S.X.
0.13 21.6 0.93 Ptp.5149.1.S1_at CK094494 hypothetical protein - 5e-5 At5g60170 RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding O.I. H.G. S.X.
0.12 19.6 0.94 PtpAffx.146792.1.A1_at CV262359 hypothetical protein - 2e-3 At3g43180 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.12 19.6 0.95 PtpAffx.158593.1.S1_at CX657772 f-box family protein - 2e+0 At5g52990 vesicle-associated membrane protein-related O.I. H.G. S.X.
0.12 19.6 0.94 PtpAffx.200727.1.S1_s_at pmrna1399 hypothetical protein - 2e-5 At2g13370 CHR5 (chromatin remodeling 5) O.I. H.G. S.X.
0.12 19.6 0.96 PtpAffx.215439.1.S1_at pmrna29631 hypothetical protein - 1e-68 At5g38640 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein O.I. H.G. S.X.
0.11 18.1 0.94 Ptp.5794.1.A1_at CV264516 - - 2e+0 At4g13380 MEE56 (maternal effect embryo arrest 56) O.I. H.G. S.X.
0.11 18.1 0.94 Ptp.608.1.S1_at AJ567344.1 hypothetical protein - 1e-21 At3g09370 MYB3R-3 (myb domain protein 3R-3) O.I. H.G. S.X.
0.11 18.1 0.95 PtpAffx.221573.1.S1_at pmrna38525 hypothetical protein - 1e-4 At5g52530 dentin sialophosphoprotein-related O.I. H.G. S.X.
0.09 14.6 0.93 PtpAffx.43760.1.A1_at CK090842 - - 9e-2 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.221573.1.S1_x_at pmrna38525 hypothetical protein - 1e-4 At5g52530 dentin sialophosphoprotein-related O.I. H.G. S.X.
0.06 9.8 0.93 PtpAffx.1197.1.S1_at CV240851 hypothetical protein - 2e-9 At5g04550 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.88	PtpAffx.223909.1.S1_at	pmrna42131	hypothetical protein	-	6e-1	At1g76994	unknown protein	O.I.	H.G.	S.X.
0.48	75.4	0.93	PtpAffx.7178.1.S1_at	BU822573	-	-	1e-2	At5g18200	UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase	O.I.	H.G.	S.X.
0.43	69.7	0.95	PtpAffx.26054.1.A1_at	CK095900	-	-	4e-1	At1g59710	-	O.I.	H.G.	S.X.
0.42	68.6	0.95	Ptp.3098.1.S1_at	BU824488	hypothetical protein	-	2e-37	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.
0.35	59.7	0.91	PtpAffx.3977.2.S1_at	DN501450	-	-	3e+0	At5g42030	ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.152314.1.A1_at	CV241611	hypothetical protein	-	9e-14	At5g62820	integral membrane protein, putative	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.26220.1.A1_at	CV257816	-	-	4e-1	At4g11250	AGL52	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.3525.2.S1_a_at	CV257740	hypothetical protein	-	6e-9	At1g55080	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.132141.1.S1_at	DN498235	hypothetical protein	-	6e-1	At1g72141	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.144674.1.S1_s_at	CV264075	hypothetical protein	-	2e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.
0.29	50.5	0.93	Ptp.4084.1.S1_at	DN484681	-	-	5e-1	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.86364.1.A1_a_at	CK097933	hypothetical protein	-	7e-2	At1g79260	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.6955.4.S1_a_at	DN491993	hypothetical protein	-	1e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.
0.27	47.1	0.95	Ptp.7719.1.A1_at	CV267988	hypothetical protein	-	4e-11	At1g05640	ankyrin repeat family protein	O.I.	H.G.	S.X.
0.26	45.2	0.96	PtpAffx.22156.1.A1_a_at	CV255460	-	-	2e-12	At4g04950	thioredoxin family protein	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.86232.1.S1_at	CV268478	-	-	2e-3	At2g46060	transmembrane protein-related	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.158876.1.S1_at	BU809969	hypothetical protein	-	5e-2	At2g19270	-	O.I.	H.G.	S.X.
0.24	41.8	0.95	PtpAffx.115188.1.A1_at	CV229892	hypothetical protein	-	2e+0	At5g27945	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.24	41.8	0.96	Ptp.4370.1.S1_s_at	BU815574	hypothetical protein	-	3e+0	At5g60810	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	0.95	PtpAffx.21910.1.S1_at	CV259421	hypothetical protein	-	2e-18	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	O.I.	H.G.	S.X.
0.19	32.7	0.94	PtpAffx.18767.1.A1_at	CV230628	hypothetical protein	-	1e+0	At3g53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	O.I.	H.G.	S.X.
0.15	25.3	0.94	PtpAffx.115633.1.S1_at	CX182054	hypothetical protein	-	3e-2	At3g59910	-	O.I.	H.G.	S.X.
0.14	23.5	0.94	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.
0.14	23.5	0.95	PtpAffx.37317.1.A1_a_at	CV246331	hypothetical protein	-	2e-30	At5g07120	SNX2b (SORTING NEXIN 2b)	O.I.	H.G.	S.X.
0.13	21.6	0.95	Ptp.537.1.S1_at	BU836563	hypothetical protein	-	4e-45	At5g57280	methyltransferase	O.I.	H.G.	S.X.
0.13	21.6	0.93	Ptp.5149.1.S1_at	CK094494	hypothetical protein	-	5e-5	At5g60170	RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.12	19.6	0.94	PtpAffx.146792.1.A1_at	CV262359	hypothetical protein	-	2e-3	At3g43180	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.12	19.6	0.95	PtpAffx.158593.1.S1_at	CX657772	f-box family protein	-	2e+0	At5g52990	vesicle-associated membrane protein-related	O.I.	H.G.	S.X.
0.12	19.6	0.94	PtpAffx.200727.1.S1_s_at	pmrna1399	hypothetical protein	-	2e-5	At2g13370	CHR5 (chromatin remodeling 5)	O.I.	H.G.	S.X.
0.12	19.6	0.96	PtpAffx.215439.1.S1_at	pmrna29631	hypothetical protein	-	1e-68	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.
0.11	18.1	0.94	Ptp.5794.1.A1_at	CV264516	-	-	2e+0	At4g13380	MEE56 (maternal effect embryo arrest 56)	O.I.	H.G.	S.X.
0.11	18.1	0.94	Ptp.608.1.S1_at	AJ567344.1	hypothetical protein	-	1e-21	At3g09370	MYB3R-3 (myb domain protein 3R-3)	O.I.	H.G.	S.X.
0.11	18.1	0.95	PtpAffx.221573.1.S1_at	pmrna38525	hypothetical protein	-	1e-4	At5g52530	dentin sialophosphoprotein-related	O.I.	H.G.	S.X.
0.09	14.6	0.93	PtpAffx.43760.1.A1_at	CK090842	-	-	9e-2	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.
0.07	11.6	0.94	PtpAffx.221573.1.S1_x_at	pmrna38525	hypothetical protein	-	1e-4	At5g52530	dentin sialophosphoprotein-related	O.I.	H.G.	S.X.
0.06	9.8	0.93	PtpAffx.1197.1.S1_at	CV240851	hypothetical protein	-	2e-9	At5g04550	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.4 90.4 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5 83.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.4	90.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.223909.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g76994: unknown protein (HF=6e-1)
Module size	36 genes
NF	0.18
%ile	33.5

Co-expression analysis

Gene ID PtpAffx.223909.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g76994: unknown protein (HF=6e-1) Module size 36 genes NF 0.18 %ile 33.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.223909.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g76994: unknown protein (HF=6e-1)

Module size 36 genes

NF 0.18

%ile 33.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays