Co-expression analysis

Gene ID PtpAffx.223651.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g80030: DNAJ heat shock protein, putative (HF=2e-1)
Module size 11 genes
NF 0.14
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.79PtpAffx.223651.1.S1_atpmrna41743hypothetical protein-2e-1At1g80030DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.2645.20.84PtpAffx.212507.1.S1_x_atpmrna24495--7e+0At5g56170-O.I.H.G.S.X.
0.2543.60.86PtpAffx.221449.1.S1_x_atpmrna38344--1e+1At5g37475translation initiation factor-relatedO.I.H.G.S.X.
0.2136.50.86PtpAffx.205560.1.S1_atpmrna10994hypothetical protein-2e-1At5g61930APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)O.I.H.G.S.X.
0.1932.70.83PtpAffx.103705.1.A1_atCK095622--1e-1At3g2339060S ribosomal protein L36a/L44 (RPL36aA)O.I.H.G.S.X.
0.1729.10.84PtpAffx.29126.1.A1_atDN487657--7e+0At5g08050-O.I.H.G.S.X.
0.1626.90.83PtpAffx.203506.1.S1_s_atpmrna6972hypothetical protein-3e+0At5g17610unknown proteinO.I.H.G.S.X.
0.1321.60.88PtpAffx.20305.1.A1_atCK091221--1e-4At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.1118.10.83PtpAffx.209890.1.S1_atpmrna19488hypothetical protein-8e-1At5g23120HCF136O.I.H.G.S.X.
0.0914.60.81PtpAffx.24608.1.A1_atCV253804AP2/ERF domain-containing transcription factor-2e-3At1g36060AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.046.90.83PtpAffx.204728.1.S1_atpmrna9312porin/voltage-dependent anion-selective channel protein-4e-1At5g65040senescence-associated protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.393.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.583.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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