Co-expression analysis

Gene ID	PtpAffx.223332.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g45360: F-box family protein (HF=1e-14)
Module size	14 genes
NF	0.49
%ile	79.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.96	PtpAffx.223332.1.S1_at	pmrna41272	hypothetical protein	-	1e-14	At5g45360	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.46832.2.S1_a_at	CF230461	hypothetical protein	-	3e-32	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.97	Ptp.2637.1.S1_at	CV253647	hypothetical protein	-	3e-58	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.8010.1.A1_s_at	CV253864	hypothetical protein	-	4e-21	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.32590.1.S1_at	CV281093	hypothetical protein	-	1e-29	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	PtpAffx.39424.1.S1_at	CV231501	hypothetical protein	-	4e-48	At1g30640	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.7624.2.S1_a_at	CV232576	hypothetical protein	-	4e-38	At1g73030	VPS46.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	Ptp.5276.1.S1_s_at	CV268936	hypothetical protein	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.63114.1.S1_at	CV253835	hypothetical protein	-	7e-28	At3g52220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.97	PtpAffx.11565.1.A1_at	CV241013	hypothetical protein	-	2e-12	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.48817.3.S1_a_at	CV262816	hypothetical protein	-	5e-101	At3g14100	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	Ptp.1985.2.A1_s_at	CV259663	hypothetical protein	-	3e-20	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	Ptp.5499.1.A1_a_at	CV241889	hypothetical protein	-	4e-47	At4g24440	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.210951.1.S1_at	pmrna21517	hypothetical protein	-	2e-34	At3g05010	transmembrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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