Co-expression analysis

Gene ID PtpAffx.223327.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g19230: CYP707A1 (HF=1e-39)
Module size 7 genes
NF 0.67
%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.93PtpAffx.223327.1.S1_atpmrna41264hypothetical protein-1e-39At4g19230CYP707A1O.I.H.G.S.X.
0.7192.60.94PtpAffx.91597.1.S1_atDN496124hypothetical protein-1e+0At4g31860protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.6791.10.96PtpAffx.161948.1.A1_atCK092884hypothetical protein-1e+0At1g27695glycine-rich proteinO.I.H.G.S.X.
0.6388.10.94PtpAffx.16889.1.S1_atCV239404hypothetical protein-4e-2At4g01680MYB55 (myb domain protein 55)O.I.H.G.S.X.
0.6086.00.96Ptp.3954.1.S1_a_atBP936963hypothetical protein-3e-52At1g64980unknown proteinO.I.H.G.S.X.
0.5984.90.95PtpAffx.19956.1.S1_atCK096932hypothetical protein-2e-17At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.5683.90.95PtpAffx.201017.1.S1_atpmrna1995hypothetical protein-2e-13At3g27220kelch repeat-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.691.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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