Co-expression analysis

Gene ID PtpAffx.223136.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g49050: aspartyl protease family protein (HF=5e-18)
Module size 6 genes
NF 0.49
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.83PtpAffx.223136.1.S1_atpmrna40986hypothetical protein-5e-18At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.6086.00.88PtpAffx.202897.1.S1_atpmrna5733hypothetical protein-3e-6At3g13980unknown proteinO.I.H.G.S.X.
0.5582.20.87Ptp.670.1.A1_atCK087317hypothetical protein-6e-1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.4471.90.87PtpAffx.95850.1.A1_atCV230444hypothetical protein-4e-1At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4067.00.82PtpAffx.4889.5.A1_atCV267649--3e-5At3g62930glutaredoxin family proteinO.I.H.G.S.X.
0.3863.70.82PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.199.0GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
9.598.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5774.1.S1_at, orthologous to the query gene, PtpAffx.223136.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7590.8Zm.5774.1.S1_atAt1g49050hypothetical protein LOC100280323-7e-5At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.6279.8Zm.17434.1.A1_atAt1g49050--9e-1At5g01340mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.6077.8Zm.6903.1.S1_atAt1g49050kinesin-like protein11-2e-10At4g05190ATK5 (ARABIDOPSIS THALIANA KINESIN 5)O.I.H.G.S.X.
0.5976.1Zm.16268.1.A1_atAt1g49050hypothetical protein LOC100272929-1e+0At2g45660AGL20 (AGAMOUS-LIKE 20)O.I.H.G.S.X.
0.5775.1Zm.2937.1.A1_atAt1g49050--2e+0At3g13227serine-rich protein-relatedO.I.H.G.S.X.
0.5775.1Zm.9744.1.A1_atAt1g49050--6e+0At5g24316proline-rich family proteinO.I.H.G.S.X.
0.5674.4Zm.16259.2.A1_x_atAt1g49050hypothetical protein LOC100273269-4e-7At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.5674.4ZmAffx.1488.1.S1_atAt1g49050--1e-28Atcg00670-O.I.H.G.S.X.
0.5469.8Zm.16351.1.A1_atAt1g49050AIG2-like protein-5e-4At2g24390-O.I.H.G.S.X.
0.5369.1Zm.7493.1.A1_atAt1g49050--5e+0At5g39140unknown proteinO.I.H.G.S.X.
0.5369.1Zm.18452.1.A1_atAt1g49050hypothetical protein LOC100194205-1e+0At5g47240atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)O.I.H.G.S.X.
0.5267.3Zm.8758.1.A1_atAt1g49050--6e+0At1g26260CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)O.I.H.G.S.X.
0.5166.4Zm.19286.1.S1_atAt1g49050hypothetical protein LOC100275478-7e-1At3g25855unknown proteinO.I.H.G.S.X.
0.5166.4Zm.1012.1.S1_atAt1g49050--3e-3At3g24210ankyrin repeat family proteinO.I.H.G.S.X.
0.5065.7Zm.6372.1.S1_atAt1g49050--8e+0At4g25830integral membrane family proteinO.I.H.G.S.X.
0.5065.7Zm.8950.1.A1_atAt1g49050--1e-17At2g18230AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)O.I.H.G.S.X.
0.4961.9Zm.12785.1.A1_atAt1g49050--3e+0At4g22105SCRL26 (SCR-Like 26)O.I.H.G.S.X.
0.4861.3Zm.9184.1.A1_atAt1g49050--4e-1At3g51440strictosidine synthase family proteinO.I.H.G.S.X.
0.4658.4Zm.7437.1.A1_atAt1g49050--1e+0At3g58100PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)O.I.H.G.S.X.
0.4455.7Zm.11384.1.A1_atAt1g49050--7e-21At3g21650serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.4352.8Zm.13484.1.A1_atAt1g49050--3e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.4352.8Zm.5480.1.A1_atAt1g49050glycine-rich RNA-binding protein 7-5e-1At2g46000unknown proteinO.I.H.G.S.X.
0.4149.7Zm.4020.1.A1_atAt1g49050hypothetical protein LOC100191912-2e-17At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.3029.8Zm.6063.2.S1_atAt1g49050Vacuolar proton pump homolog1-2e-10At1g15690AVP1O.I.H.G.S.X.
0.2928.1Zm.6064.1.S1_atAt1g49050low-molecular-weight cysteine-rich protein LCR70-4e+0At4g04330unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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