Co-expression analysis

Gene ID PtpAffx.223136.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g49050: aspartyl protease family protein (HF=5e-18)
Module size 6 genes
NF 0.49
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.83PtpAffx.223136.1.S1_atpmrna40986hypothetical protein-5e-18At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.6086.00.88PtpAffx.202897.1.S1_atpmrna5733hypothetical protein-3e-6At3g13980unknown proteinO.I.H.G.S.X.
0.5582.20.87Ptp.670.1.A1_atCK087317hypothetical protein-6e-1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.4471.90.87PtpAffx.95850.1.A1_atCV230444hypothetical protein-4e-1At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4067.00.82PtpAffx.4889.5.A1_atCV267649--3e-5At3g62930glutaredoxin family proteinO.I.H.G.S.X.
0.3863.70.82PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.199.0GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
9.598.8GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.11057.1.A1_at, orthologous to the query gene, PtpAffx.223136.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.3Ta.11057.1.A1_atAt1g49050--4e+0At3g18518RTFL20 (ROTUNDIFOLIA LIKE 20)O.I.H.G.S.X.
0.6081.0TaAffx.32271.1.S1_atAt1g49050--3e-12At4g31920ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10)O.I.H.G.S.X.
0.5576.8Ta.11601.1.A1_atAt1g49050--3e+0At3g17460PHD finger family proteinO.I.H.G.S.X.
0.5072.4Ta.27512.1.S1_atAt1g49050--2e+0At3g42310unknown proteinO.I.H.G.S.X.
0.4464.5Ta.27545.1.S1_atAt1g49050--1e-1At1g02180ferredoxin-relatedO.I.H.G.S.X.
0.3346.9Ta.4891.1.A1_atAt1g49050--7e+0At3g59455-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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