CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.223043.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g32970: subtilase family protein (HF=2e-4)

Module size 6 genes

NF 0.17

%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.223043.1.S1_at pmrna40832 - - 2e-4 At1g32970 subtilase family protein O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.211107.1.S1_x_at pmrna21820 hypothetical protein - 2e+0 At2g31620 receptor-like protein kinase-related O.I. H.G. S.X.
0.33 57.5 0.91 PtpAffx.5285.1.A1_s_at CV254744 hypothetical protein - 1e+0 At1g55670 PSAG (PHOTOSYSTEM I SUBUNIT G) O.I. H.G. S.X.
0.33 57.5 0.91 Ptp.457.2.S1_at CK089199 hypothetical protein - 8e-1 At3g59360 UTR6 (UDP-GALACTOSE TRANSPORTER 6) O.I. H.G. S.X.
0.15 25.3 0.91 PtpAffx.218039.1.S1_at pmrna33551 hypothetical protein - 1e-8 At2g37680 - O.I. H.G. S.X.
0.06 9.8 0.90 PtpAffx.213729.1.S1_at pmrna26794 hypothetical protein - 5e+0 At4g29033 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.9 98.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0 95.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the maize gene, Zm.4820.1.A1_a_at, orthologous to the query gene, PtpAffx.223043.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.4820.1.A1_a_at At1g32970 hypothetical protein LOC100192684 - 1e-35 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) O.I. H.G. S.X.
0.50 65.7 Zm.18499.1.S1_at At1g32970 hypothetical protein LOC100193919 - 7e-1 At1g01750 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) O.I. H.G. S.X.
0.44 55.7 Zm.18314.1.S1_at At1g32970 oil yellow1 - 3e+0 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.35 38.9 Zm.5976.1.S1_at At1g32970 hypothetical protein LOC100279511 - 4e-5 At1g69370 CM3 (chorismate mutase 3) O.I. H.G. S.X.
0.23 18.6 Zm.14547.1.S1_a_at At1g32970 - - 2e+0 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) O.I. H.G. S.X.
0.11 5.3 Zm.6532.9.S1_at At1g32970 hypothetical protein LOC100192494 - 2e-2 At1g18340 basal transcription factor complex subunit-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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