Co-expression analysis

Gene ID	PtpAffx.223043.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g32970: subtilase family protein (HF=2e-4)
Module size	6 genes
NF	0.17
%ile	32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.223043.1.S1_at	pmrna40832	-	-	2e-4	At1g32970	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.211107.1.S1_x_at	pmrna21820	hypothetical protein	-	2e+0	At2g31620	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.5285.1.A1_s_at	CV254744	hypothetical protein	-	1e+0	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	Ptp.457.2.S1_at	CK089199	hypothetical protein	-	8e-1	At3g59360	UTR6 (UDP-GALACTOSE TRANSPORTER 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.218039.1.S1_at	pmrna33551	hypothetical protein	-	1e-8	At2g37680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.90	PtpAffx.213729.1.S1_at	pmrna26794	hypothetical protein	-	5e+0	At4g29033	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	98.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the grape gene, 1620551_s_at, orthologous to the query gene, PtpAffx.223043.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.2	1620551_s_at	At1g32970	hypothetical protein LOC100266698	-	4e+0	At5g23212	-	O.I.	H.G.	S.X.	Please select
0.72	89.7	1607407_at	At1g32970	similar to nitrate reductase	-	2e-3	At1g77760	NIA1 (NITRATE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1618742_at	At1g32970	hypothetical protein LOC100244789	-	4e-1	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	O.I.	H.G.	S.X.	Please select
0.66	85.1	1610934_s_at	At1g32970	hypothetical protein LOC100241651	-	1e-10	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1610036_at	At1g32970	hypothetical protein LOC100244789	-	7e-2	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1611159_at	At1g32970	hypothetical protein LOC100254481	-	5e-26	At3g51895	SULTR3	O.I.	H.G.	S.X.	Please select
0.63	84.3	1621495_at	At1g32970	hypothetical protein LOC100259742	-	2e-7	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1608908_at	At1g32970	hypothetical protein LOC100256431	-	3e-27	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1617790_at	At1g32970	hypothetical protein LOC100262138	-	2e-3	At4g00050	UNE10 (unfertilized embryo sac 10)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1615141_at	At1g32970	hypothetical protein LOC100247840	-	2e+0	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.53	75.2	1612562_at	At1g32970	hypothetical protein LOC100264675	-	4e-31	At5g67370	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1610871_s_at	At1g32970	hypothetical protein LOC100244516	-	0	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1610691_at	At1g32970	hypothetical protein LOC100250451	-	1e-6	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1619418_at	At1g32970	hypothetical protein LOC100262138	-	2e+1	At4g30410	transcription factor	O.I.	H.G.	S.X.	Please select
0.49	69.3	1607585_at	At1g32970	hypothetical protein LOC100267799	-	7e+0	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1619127_at	At1g32970	hypothetical protein LOC100264365	-	2e+0	At4g02075	PIT1 (pitchoun 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1618989_at	At1g32970	hypothetical protein LOC100258700	-	1e+0	At1g67785	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1615128_at	At1g32970	hypothetical protein LOC100253412	-	1e+0	At3g45093	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1608268_at	At1g32970	hypothetical protein LOC100264331	-	4e+0	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1621055_a_at	At1g32970	hypothetical LOC100263712	-	5e-1	At2g04039	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1607548_at	At1g32970	hypothetical protein LOC100260378	-	2e-33	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614183_at	At1g32970	hypothetical protein LOC100268021	-	6e-33	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614061_at	At1g32970	hypothetical protein LOC100264676	-	2e-14	At1g25440	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1609903_at	At1g32970	hypothetical protein LOC100256148	-	4e+0	At5g02200	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607155_at	At1g32970	hypothetical protein LOC100266884	-	2e-6	At1g50020	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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