Co-expression analysis

Gene ID	PtpAffx.222983.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g42800: AtRLP29 (Receptor Like Protein 29) (HF=2e-10)
Module size	13 genes
NF	0.13
%ile	25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.85	PtpAffx.222983.1.S1_at	pmrna40737	hypothetical protein	-	2e-10	At2g42800	AtRLP29 (Receptor Like Protein 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.94757.1.A1_at	CV272910	-	-	4e-1	At1g24270	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.87	Ptp.2329.1.S1_s_at	CV236462	hypothetical protein	-	2e-12	At5g20950	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.92	PtpAffx.37292.1.A1_at	CV257510	hypothetical protein	-	9e-2	At2g38680	5'-nucleotidase/ magnesium ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.205829.1.S1_at	pmrna11535	hypothetical protein	-	7e-4	At1g19980	cytomatrix protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	Ptp.4172.1.A1_at	CV242570	hypothetical protein	-	2e-4	At3g61790	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.202825.1.S1_at	pmrna5597	-	-	4e-1	At5g16850	ATTERT (TELOMERASE REVERSE TRANSCRIPTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.87	PtpAffx.6689.1.A1_at	CV228428	hypothetical protein	-	9e-3	At3g57830	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.43204.1.A1_at	CV257135	hypothetical protein	-	2e+0	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.89	PtpAffx.212862.1.S1_s_at	pmrna25167	hypothetical protein	-	4e-8	At2g26700	PID2 (PINOID2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.69860.1.A1_at	CV240738	hypothetical protein	-	2e-20	At1g15700	ATPC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.85	PtpAffx.206215.1.S1_at	pmrna12339	hypothetical protein	-	6e-19	At2g45490	AtAUR3 (ATAURORA3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.87	PtpAffx.43877.1.A1_at	CV255188	hypothetical protein	-	4e-38	At2g36250	FTSZ2-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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