Co-expression analysis

Gene ID PtpAffx.222762.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g05170: phosphoglycerate/bisphosphoglycerate mutase family protein (HF=4e-7)
Module size 6 genes
NF 0.02
%ile 4.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.92PtpAffx.222762.1.S1_atpmrna40401hypothetical protein-4e-7At3g05170phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.1423.50.90PtpAffx.6389.1.A1_atCV281498hypothetical protein-6e-1At5g16770AtMYB9 (myb domain protein 9)O.I.H.G.S.X.
0.058.30.93PtpAffx.148941.1.S1_atAJ779465hypothetical protein-3e-8At5g32440-O.I.H.G.S.X.
0.035.20.93PtpAffx.211136.1.S1_s_atpmrna21877hypothetical protein-2e-27At3g03560unknown proteinO.I.H.G.S.X.
0.012.20.93PtpAffx.27692.3.A1_a_atCV258377hypothetical protein-7e-52At4g17270Mo25 family proteinO.I.H.G.S.X.
0.012.20.91PtpAffx.96160.1.S1_atCV245761--3e-2At3g56480myosin heavy chain-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4673.70.90PtpAffx.222774.1.S1_atpmrna40415hypothetical protein-1e-6At4g16710glycosyltransferase family protein 28O.I.H.G.S.X.
0.3153.70.92PtpAffx.212647.1.S1_atpmrna24750hypothetical protein-2e-12At5g61200-O.I.H.G.S.X.
0.2340.50.93Ptp.1043.1.A1_atCK090206--1e-19At3g07940zinc finger and C2 domain protein, putativeO.I.H.G.S.X.
0.1626.90.92PtpAffx.54563.1.S1_atCV227121hypothetical protein-3e-24At1g69380unknown proteinO.I.H.G.S.X.
0.1626.90.93PtpAffx.213994.1.S1_atpmrna27263hypothetical protein-7e-35At3g29390RIK (RS2-Interacting KH protein)O.I.H.G.S.X.
0.1525.30.93PtpAffx.213097.1.S1_atpmrna25629hypothetical protein-8e-29At5g52410unknown proteinO.I.H.G.S.X.
0.1423.50.94PtpAffx.7050.1.S1_atCV268085hypothetical protein-1e-38At1g07540TRFL2 (TRF-LIKE 2)O.I.H.G.S.X.
0.1118.10.91PtpAffx.22459.2.S1_a_atCV225581hypothetical protein-3e-2At3g47640basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1016.30.94PtpAffx.28832.1.S1_atCV254458hypothetical protein-4e-12At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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