Co-expression analysis

Gene ID	PtpAffx.222762.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g05170: phosphoglycerate/bisphosphoglycerate mutase family protein (HF=4e-7)
Module size	6 genes
NF	0.02
%ile	4.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.92	PtpAffx.222762.1.S1_at	pmrna40401	hypothetical protein	-	4e-7	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.6389.1.A1_at	CV281498	hypothetical protein	-	6e-1	At5g16770	AtMYB9 (myb domain protein 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.93	PtpAffx.148941.1.S1_at	AJ779465	hypothetical protein	-	3e-8	At5g32440	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.93	PtpAffx.211136.1.S1_s_at	pmrna21877	hypothetical protein	-	2e-27	At3g03560	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.93	PtpAffx.27692.3.A1_a_at	CV258377	hypothetical protein	-	7e-52	At4g17270	Mo25 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.91	PtpAffx.96160.1.S1_at	CV245761	-	-	3e-2	At3g56480	myosin heavy chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.19118.1.A1_at, orthologous to the query gene, PtpAffx.222762.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	Zm.19118.1.A1_at	At3g05170	hypothetical protein LOC100274224	-	6e+0	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.6200.2.S1_a_at	At3g05170	Hypothetical protein LOC100191329	-	3e-3	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.18033.1.A1_at	At3g05170	-	-	1e+0	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6096.1.A1_at	At3g05170	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.4860.2.A1_at	At3g05170	-	-	3e+0	At2g34140	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.384.1.A1_at	At3g05170	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.5305.1.A1_at	At3g05170	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.6946.2.A1_at	At3g05170	Hypothetical protein LOC100191975	-	3e-6	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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