Co-expression analysis

Gene ID	PtpAffx.222709.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g04870: ZDS (ZETA-CAROTENE DESATURASE) (HF=2e-78)
Module size	6 genes
NF	0.67
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.222709.1.S1_at	pmrna40297	hypothetical protein	-	2e-78	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	Ptp.864.3.S1_at	CK088925	hypothetical protein	-	8e-1	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	PtpAffx.106236.1.S1_s_at	DN501710	hypothetical protein	-	2e-13	At5g08650	GTP-binding protein LepA, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	PtpAffx.211461.1.S1_at	pmrna22464	hypothetical protein	-	8e-156	At2g45290	transketolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	Ptp.579.1.A1_at	CV240001	hypothetical protein	-	1e+0	At1g44760	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.4206.1.S1_at	CV236414	hypothetical protein	-	1e+1	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage