Co-expression analysis

Gene ID	PtpAffx.222355.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g17215: unknown protein (HF=2e-2)
Module size	11 genes
NF	0.20
%ile	37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.87	PtpAffx.222355.1.S1_at	pmrna39704	hypothetical protein	-	2e-2	At4g17215	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.89	PtpAffx.206198.1.S1_at	pmrna12307	-	-	2e-4	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.222240.1.S1_at	pmrna39525	hypothetical protein	-	2e+0	At4g24231	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.82626.1.A1_at	CV239761	-	-	4e+0	At5g04260	WCRKC2 (WCRKC THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.223995.1.S1_at	pmrna42224	hypothetical protein	-	9e-7	At5g27270	EMB976 (EMBRYO DEFECTIVE 976)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.89	PtpAffx.211658.1.S1_s_at	pmrna22844	hypothetical protein	-	6e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.89	PtpAffx.219071.1.S1_at	pmrna34877	hypothetical protein	-	2e-34	Atcg00350	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.212325.1.S1_s_at	pmrna24169	-	-	4e-1	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.213427.1.S1_at	pmrna26255	hypothetical protein	-	2e-38	At2g05220	40S ribosomal protein S17 (RPS17B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.90	PtpAffx.5452.3.A1_at	CV281348	-	-	7e-24	At2g19720	rps15ab (ribosomal protein S15A B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.91	PtpAffx.7042.1.S1_at	BI123470	-	-	2e+0	At5g40382	cytochrome-c oxidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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