Co-expression analysis

Gene ID	PtpAffx.222279.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to Atcg00040: - (HF=1e-28)
Module size	11 genes
NF	0.31
%ile	55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	0.87	PtpAffx.222279.1.S1_x_at	pmrna39592	hypothetical protein	-	1e-28	Atcg00040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.94	PtpAffx.147335.1.A1_at	CV236812	hypothetical protein	-	2e-12	At1g62390	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	PtpAffx.147311.1.A1_at	CV242075	hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5	-	2e-12	At2g17265	HSK (HOMOSERINE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	Ptp.5867.1.S1_at	CV245725	-	-	1e-42	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	Ptp.6435.1.S1_at	CV231123	hypothetical protein	-	5e-26	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.114620.1.A1_at	CV252222	-	-	9e+0	Atcg01080	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.213727.1.S1_at	pmrna26792	hypothetical protein	-	8e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.215363.1.S1_at	pmrna29506	hypothetical protein	-	3e+0	At5g52340	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.15017.2.A1_a_at	CV254853	hypothetical protein	-	3e-14	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	Ptp.1692.1.A1_s_at	CK092983	hypothetical protein	-	1e-5	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.211252.1.S1_at	pmrna22086	hypothetical protein	-	2e-10	At3g56330	N2,N2-dimethylguanosine tRNA methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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