Co-expression analysis

Gene ID	PtpAffx.222228.1.S1_s_at
Gene name	predicted small molecule transporter
Homology with Arabidopsis	Similar to At5g35730: EXS family protein / ERD1/XPR1/SYG1 family protein (HF=9e-22)
Module size	6 genes
NF	0.20
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.90	PtpAffx.222228.1.S1_s_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.76470.1.A1_at	CV229100	f-box family protein	-	2e-1	At3g53100	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.91	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.7623.1.A1_at	CV229183	hypothetical protein	-	2e-2	At3g48800	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.91	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the grape gene, 1622358_s_at, orthologous to the query gene, PtpAffx.222228.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1622358_s_at	At5g35730	hypothetical protein LOC100248535	-	7e-2	At2g28305	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	93.9	1609793_at	At5g35730	hypothetical protein LOC100245778	-	3e-1	At2g03800	GEK1 (GEKO1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	1614680_at	At5g35730	-	-	2e-46	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.78	92.6	1614574_at	At5g35730	-	-	3e-5	At2g37210	-	O.I.	H.G.	S.X.	Please select
0.75	91.3	1614862_at	At5g35730	hypothetical protein LOC100265103	-	1e-1	At2g30670	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.74	91.0	1614441_at	At5g35730	hypothetical protein LOC100264239	-	1e-3	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	1618110_s_at	At5g35730	hypothetical protein LOC100245111	-	3e-52	At4g27450	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1617698_at	At5g35730	hypothetical protein LOC100259464	-	5e-23	At1g30910	molybdenum cofactor sulfurase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage