CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.222228.1.S1_s_at

Gene name predicted small molecule transporter
Homology with Arabidopsis Similar to At5g35730: EXS family protein / ERD1/XPR1/SYG1 family protein (HF=9e-22)

Module size 6 genes

NF 0.20

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.90 PtpAffx.222228.1.S1_s_at pmrna39503 predicted small molecule transporter - 9e-22 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.60 86.0 0.89 PtpAffx.76470.1.A1_at CV229100 f-box family protein - 2e-1 At3g53100 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.18 30.8 0.91 PtpAffx.57186.1.A1_a_at CV233728 hypothetical protein /// gdp-mannose 4,6-dehydratase - 8e-49 At3g51160 MUR1 (MURUS 1) O.I. H.G. S.X.
0.14 23.5 0.91 PtpAffx.3698.2.S1_at BU894200 hypothetical protein - 1e-82 At1g77610 glucose-6-phosphate/phosphate translocator-related O.I. H.G. S.X.
0.11 18.1 0.90 PtpAffx.7623.1.A1_at CV229183 hypothetical protein - 2e-2 At3g48800 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.10 16.3 0.91 Ptp.4715.2.S1_s_at CV228991 hypothetical protein - 2e-9 At4g30160 VLN4 (ARABIDOPSIS THALIANA VILLIN 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 97.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, Ta.10706.1.S1_x_at, orthologous to the query gene, PtpAffx.222228.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 Ta.10706.1.S1_x_at At5g35730 - - 5e-11 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.25 32.1 Ta.10706.1.S1_at At5g35730 - - 5e-11 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.21 25.5 Ta.27153.1.S1_at At5g35730 - - 7e-27 At5g27600 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) O.I. H.G. S.X.
0.12 13.3 TaAffx.3401.1.S1_at At5g35730 - - 1e-6 At1g22860 unknown protein O.I. H.G. S.X.
0.09 10.4 Ta.5680.1.A1_at At5g35730 - - 2e-9 At5g20490 XIK O.I. H.G. S.X.
0.03 4.7 Ta.7590.2.S1_a_at At5g35730 - - 9e-8 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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