Co-expression analysis

Gene ID	PtpAffx.222228.1.S1_s_at
Gene name	predicted small molecule transporter
Homology with Arabidopsis	Similar to At5g35730: EXS family protein / ERD1/XPR1/SYG1 family protein (HF=9e-22)
Module size	6 genes
NF	0.20
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.90	PtpAffx.222228.1.S1_s_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.76470.1.A1_at	CV229100	f-box family protein	-	2e-1	At3g53100	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.91	PtpAffx.57186.1.A1_a_at	CV233728	hypothetical protein /// gdp-mannose 4,6-dehydratase	-	8e-49	At3g51160	MUR1 (MURUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.3698.2.S1_at	BU894200	hypothetical protein	-	1e-82	At1g77610	glucose-6-phosphate/phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.7623.1.A1_at	CV229183	hypothetical protein	-	2e-2	At3g48800	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.91	Ptp.4715.2.S1_s_at	CV228991	hypothetical protein	-	2e-9	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the barley gene, Contig14948_at, orthologous to the query gene, PtpAffx.222228.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	Contig14948_at	At5g35730	-	-	1e-4	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig13951_at	At5g35730	-	-	7e+0	At5g18404	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig5523_at	At5g35730	-	-	4e-8	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig25339_at	At5g35730	-	-	7e-2	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig7433_at	At5g35730	-	-	5e-11	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig7968_at	At5g35730	-	-	3e-1	At3g53980	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig24256_at	At5g35730	-	-	4e+0	At5g44420	PDF1.2	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig20588_at	At5g35730	-	-	1e+0	At5g38130	transferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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