CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.222228.1.S1_s_at

Gene name predicted small molecule transporter
Homology with Arabidopsis Similar to At5g35730: EXS family protein / ERD1/XPR1/SYG1 family protein (HF=9e-22)

Module size 6 genes

NF 0.20

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.90 PtpAffx.222228.1.S1_s_at pmrna39503 predicted small molecule transporter - 9e-22 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.60 86.0 0.89 PtpAffx.76470.1.A1_at CV229100 f-box family protein - 2e-1 At3g53100 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.18 30.8 0.91 PtpAffx.57186.1.A1_a_at CV233728 hypothetical protein /// gdp-mannose 4,6-dehydratase - 8e-49 At3g51160 MUR1 (MURUS 1) O.I. H.G. S.X.
0.14 23.5 0.91 PtpAffx.3698.2.S1_at BU894200 hypothetical protein - 1e-82 At1g77610 glucose-6-phosphate/phosphate translocator-related O.I. H.G. S.X.
0.11 18.1 0.90 PtpAffx.7623.1.A1_at CV229183 hypothetical protein - 2e-2 At3g48800 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.10 16.3 0.91 Ptp.4715.2.S1_s_at CV228991 hypothetical protein - 2e-9 At4g30160 VLN4 (ARABIDOPSIS THALIANA VILLIN 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 97.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g35730, orthologous to the query gene, PtpAffx.222228.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.20 14.4 At5g35730 833549 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO O.I. H.G. S.X.
0.31 33.8 At1g34020 840299 transporter-related F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB O.I. H.G. S.X.
0.26 24.4 At1g16570 838227 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:mitochondrion;BMOFPA O.I. H.G. S.X.
0.25 22.6 At5g16300 831491 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.20 14.4 At5g11980 831071 conserved oligomeric Golgi complex component-related / COG complex component-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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