CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.222153.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to Atmg00030: - (HF=3e-2)

Module size 6 genes

NF 0.34

%ile 59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.30 52.0 0.89 PtpAffx.222153.1.S1_at pmrna39394 hypothetical protein - 3e-2 Atmg00030 - O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.6526.1.S1_a_at CV268340 hypothetical protein - 2e-34 At5g08580 calcium-binding EF hand family protein O.I. H.G. S.X.
0.47 74.6 0.89 PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein O.I. H.G. S.X.
0.27 47.1 0.91 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - O.I. H.G. S.X.
0.14 23.5 0.90 PtpAffx.121653.1.A1_at CV231587 hypothetical protein - 7e-5 At2g16405 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.88	PtpAffx.214149.1.S1_at	pmrna27532	hypothetical protein	-	3e-37	At2g25737	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.85	PtpAffx.120427.1.A1_at	CV281080	-	-	2e+0	At3g56170	CAN (CA-2+ DEPENDENT NUCLEASE)	O.I.	H.G.	S.X.
0.33	57.5	0.85	PtpAffx.208501.1.S1_at	pmrna16879	-	-	7e-1	At3g27430	PBB1	O.I.	H.G.	S.X.
0.33	57.5	0.86	Ptp.5428.1.S1_at	CV250257	hypothetical protein	-	3e-9	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	O.I.	H.G.	S.X.
0.31	53.7	0.83	PtpAffx.95157.1.A1_at	CV257784	-	-	4e+0	At3g26860	-	O.I.	H.G.	S.X.
0.31	53.7	0.84	PtpAffx.134165.1.A1_at	CV245658	-	-	5e+0	At3g12977	DNA binding	O.I.	H.G.	S.X.
0.26	45.2	0.83	PtpAffx.200451.1.S1_at	pmrna907	hypothetical protein	-	4e-1	At1g16210	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.87	PtpAffx.75358.1.A1_at	CV273170	-	-	1e-1	At5g60990	DEAD/DEAH box helicase, putative (RH10)	O.I.	H.G.	S.X.
0.24	41.8	0.85	PtpAffx.202819.1.S1_at	pmrna5588	hypothetical protein	-	3e-7	At4g22970	AESP (ARABIDOPSIS HOMOLOG OF SEPARASE)	O.I.	H.G.	S.X.
0.24	41.8	0.83	PtpAffx.212202.1.S1_at	pmrna23917	hypothetical protein	-	4e-1	At1g61500	S-locus protein kinase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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