Co-expression analysis

Gene ID PtpAffx.222153.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to Atmg00030: - (HF=3e-2)
Module size 6 genes
NF 0.34
%ile 59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3052.00.89PtpAffx.222153.1.S1_atpmrna39394hypothetical protein-3e-2Atmg00030-O.I.H.G.S.X.
0.5078.60.90PtpAffx.6526.1.S1_a_atCV268340hypothetical protein-2e-34At5g08580calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4774.60.89PtpAffx.53314.1.A1_atCV229793hypothetical protein-7e-2At1g14450unknown proteinO.I.H.G.S.X.
0.4067.00.93PtpAffx.213720.1.S1_atpmrna26774hypothetical protein-9e-9At3g51610unknown proteinO.I.H.G.S.X.
0.2747.10.91PtpAffx.70456.1.A1_atCK090706hypothetical protein-2e+0At3g58600-O.I.H.G.S.X.
0.1423.50.90PtpAffx.121653.1.A1_atCV231587hypothetical protein-7e-5At2g16405transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.00.88PtpAffx.214149.1.S1_atpmrna27532hypothetical protein-3e-37At2g25737unknown proteinO.I.H.G.S.X.
0.5078.60.85PtpAffx.120427.1.A1_atCV281080--2e+0At3g56170CAN (CA-2+ DEPENDENT NUCLEASE)O.I.H.G.S.X.
0.3357.50.85PtpAffx.208501.1.S1_atpmrna16879--7e-1At3g27430PBB1O.I.H.G.S.X.
0.3357.50.86Ptp.5428.1.S1_atCV250257hypothetical protein-3e-9At5g54110ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)O.I.H.G.S.X.
0.3153.70.83PtpAffx.95157.1.A1_atCV257784--4e+0At3g26860-O.I.H.G.S.X.
0.3153.70.84PtpAffx.134165.1.A1_atCV245658--5e+0At3g12977DNA bindingO.I.H.G.S.X.
0.2645.20.83PtpAffx.200451.1.S1_atpmrna907hypothetical protein-4e-1At1g16210unknown proteinO.I.H.G.S.X.
0.2543.60.87PtpAffx.75358.1.A1_atCV273170--1e-1At5g60990DEAD/DEAH box helicase, putative (RH10)O.I.H.G.S.X.
0.2441.80.85PtpAffx.202819.1.S1_atpmrna5588hypothetical protein-3e-7At4g22970AESP (ARABIDOPSIS HOMOLOG OF SEPARASE)O.I.H.G.S.X.
0.2441.80.83PtpAffx.212202.1.S1_atpmrna23917hypothetical protein-4e-1At1g61500S-locus protein kinase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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