Co-expression analysis

Gene ID	PtpAffx.22200.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g26200: mitochondrial substrate carrier family protein (HF=3e-20)
Module size	6 genes
NF	0.43
%ile	72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.94	PtpAffx.22200.1.S1_a_at	CV239849	hypothetical protein	-	3e-20	At5g26200	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.95	PtpAffx.22200.2.S1_at	CV241652	hypothetical protein	-	2e-19	At5g26200	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	Ptp.7478.1.S1_at	BU866961	hypothetical protein	-	2e-3	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.249.529.A1_a_at	CV271463	-	-	2e+0	At3g10240	F-box protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.28701.2.S1_s_at	BU867887	hypothetical protein	-	1e-13	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	Ptp.3530.1.S1_at	CV262873	hypothetical protein	-	1e-1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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