Co-expression analysis

Gene ID	PtpAffx.22188.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g50110: branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) (HF=1e-1)
Module size	20 genes
NF	0.35
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	0.87	PtpAffx.22188.1.S1_at	CK104459	hypothetical protein	-	1e-1	At1g50110	branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.92	Ptp.2554.1.A1_at	AF377868.1	MIKC mads-box transcription factor PTM5	-	4e-8	At2g45660	AGL20 (AGAMOUS-LIKE 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.93	Ptp.3226.1.S1_s_at	DN496211	hypothetical protein	-	5e-2	At1g01970	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.90	PtpAffx.95783.1.A1_at	CV232900	hypothetical protein	-	9e-5	At1g73740	glycosyl transferase family 28 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.93	PtpAffx.205285.1.S1_at	pmrna10476	hypothetical protein	-	3e-19	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.91	PtpAffx.206667.1.S1_at	pmrna13230	hypothetical protein	-	1e-72	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.90	PtpAffx.103430.1.A1_at	CK096715	hypothetical protein	-	4e-17	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	PtpAffx.36812.1.A1_a_at	CV277831	hypothetical protein	-	1e-1	At4g19420	pectinacetylesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.90	Ptp.1572.1.A1_at	CK093708	hypothetical protein	-	1e-17	At3g01180	AtSS2 (starch synthase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.93	Ptp.2632.1.S1_at	CK111660	-	-	6e-72	Atcg00710	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.204815.1.S1_at	pmrna9495	hypothetical protein	-	3e-11	At2g26840	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.90	PtpAffx.15351.1.S1_at	CV227554	hypothetical protein	-	7e-26	At3g16170	acyl-activating enzyme 13 (AAE13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.150917.1.S1_at	CK103462	hypothetical protein	-	1e-28	At5g63860	UVR8 (UVB-RESISTANCE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.58772.2.A1_a_at	CA930502	-	-	5e-7	At1g01630	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.90	PtpAffx.35502.1.A1_at	DN487799	hypothetical protein	-	2e-2	At3g22104	phototropic-responsive NPH3 protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.143676.3.S1_at	CN522207	formyltetrahydrofolate deformylase	-	3e-17	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	PtpAffx.58727.1.S1_at	CV266049	hypothetical protein	-	3e-4	At5g63860	UVR8 (UVB-RESISTANCE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	Ptp.887.1.S1_at	CK090278	hypothetical protein	-	4e-4	At1g80770	PDE318 (pigment defective 318)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.90	Ptp.1318.1.S1_at	CV256946	hypothetical protein	-	5e-4	At5g19250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.214145.1.S1_at	pmrna27522	hypothetical protein	-	1e-1	At4g11175	translation initiation factor IF-1, chloroplast, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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