Co-expression analysis

Gene ID	PtpAffx.22176.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g03020: unknown protein (HF=1e-2)
Module size	6 genes
NF	0.40
%ile	67.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.86	PtpAffx.22176.1.A1_at	CV239407	hypothetical protein	-	1e-2	At3g03020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	PtpAffx.95576.1.A1_at	CV240758	-	-	6e+0	At5g61410	RPE	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.114935.1.A1_at	CV240866	hypothetical protein	-	2e-2	At3g46620	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.89	PtpAffx.210935.1.S1_at	pmrna21488	hypothetical protein	-	1e-5	At3g05400	sugar transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.211761.1.S1_at	pmrna23057	hypothetical protein	-	8e-10	At1g02860	NLA (nitrogen limitation adaptation)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.89	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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