Co-expression analysis

Gene ID PtpAffx.22176.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g03020: unknown protein (HF=1e-2)
Module size 6 genes
NF 0.40
%ile 67.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.86PtpAffx.22176.1.A1_atCV239407hypothetical protein-1e-2At3g03020unknown proteinO.I.H.G.S.X.
0.4471.90.89PtpAffx.95576.1.A1_atCV240758--6e+0At5g61410RPEO.I.H.G.S.X.
0.3661.60.89PtpAffx.114935.1.A1_atCV240866hypothetical protein-2e-2At3g46620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3357.50.89PtpAffx.210935.1.S1_atpmrna21488hypothetical protein-1e-5At3g05400sugar transporter, putativeO.I.H.G.S.X.
0.2950.50.89PtpAffx.211761.1.S1_atpmrna23057hypothetical protein-8e-10At1g02860NLA (nitrogen limitation adaptation)O.I.H.G.S.X.
0.2238.30.89PtpAffx.135298.1.A1_atCV232578hypothetical protein-1e+0At1g16490MYB58 (MYB DOMAIN PROTEIN 58)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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