Co-expression analysis

Gene ID	PtpAffx.221733.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g32730: unknown protein (HF=8e-5)
Module size	30 genes
NF	0.19
%ile	36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.87	PtpAffx.221733.1.S1_s_at	pmrna38769	hypothetical protein	-	8e-5	At1g32730	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.221607.1.S1_at	pmrna38578	hypothetical protein	-	4e-2	At5g37930	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.249.450.S1_at	CN518216	hypothetical protein	-	1e+0	At1g52590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.210578.1.S1_at	pmrna20747	hypothetical protein	-	1e-27	At5g66540	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.215338.1.S1_s_at	pmrna29464	hypothetical protein	-	8e-15	At2g45320	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.92	PtpAffx.113553.1.S1_a_at	CX182949	hypothetical protein	-	6e-31	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.78969.1.S1_at	DN501659	hypothetical protein	-	1e-6	At1g02145	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	PtpAffx.104237.1.A1_at	CV254710	-	-	4e-8	At1g72990	BGAL17 (beta-galactosidase 17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.203143.1.S1_at	pmrna6228	hypothetical protein	-	1e-56	At1g17760	CSTF77	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	PtpAffx.207427.1.S1_at	pmrna14740	hypothetical protein	-	5e-29	At5g65685	soluble glycogen synthase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.217285.1.S1_at	pmrna32483	hypothetical protein	-	5e-2	At3g56420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.89	PtpAffx.114924.1.A1_s_at	CV239555	hypothetical protein	-	5e-6	At4g09020	ISA3 (ISOAMYLASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.200279.1.S1_s_at	pmrna555	hypothetical protein	-	2e-50	At5g47860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.91	PtpAffx.82174.1.A1_at	CV257564	hypothetical protein	-	6e-15	At5g15920	structural maintenance of chromosomes (SMC) family protein (MSS2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.203291.1.S1_at	pmrna6522	hypothetical protein	-	1e-13	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.158988.1.S1_at	BU873906	hypothetical protein	-	7e-9	At1g79600	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	PtpAffx.215584.1.S1_at	pmrna29861	hypothetical protein	-	4e-1	At1g33330	peptide chain release factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.206245.1.S1_at	pmrna12391	hypothetical protein	-	4e-93	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.134798.1.S1_at	AJ780380	hypothetical protein	-	4e-1	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	Ptp.4229.1.S1_s_at	CN519003	hypothetical protein	-	5e-6	At5g01590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.249.240.S1_at	CV266560	hypothetical protein	-	9e-35	At3g45240	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	PtpAffx.103881.1.A1_at	CV269333	hypothetical protein	-	3e-5	At3g55390	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.92	PtpAffx.25622.1.S1_at	CV238522	hypothetical protein	-	3e-43	At5g47760	ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.93	PtpAffx.89237.1.A1_at	CV232343	hypothetical protein	-	3e-11	At1g21710	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.201679.1.S1_at	pmrna3346	hypothetical protein	-	4e-17	At1g06730	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.92	PtpAffx.205793.1.S1_at	pmrna11455	-	-	2e-9	At1g45110	tetrapyrrole methylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.95	PtpAffx.205718.1.S1_at	pmrna11288	hypothetical protein	-	1e+0	At5g48540	33 kDa secretory protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.158462.1.S1_at	CX171770	predicted membrane protein	-	5e-6	At4g13590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.83913.1.S1_at	CK107458	hypothetical protein	-	1e+0	At1g67360	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.94	PtpAffx.217815.1.S1_s_at	pmrna33229	hypothetical protein	-	2e+0	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.5	83.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage