Co-expression analysis

Gene ID PtpAffx.221575.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g23990: FRO5 (FERRIC REDUCTION OXIDASE 5) (HF=2e-11)
Module size 12 genes
NF 0.30
%ile 52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.84PtpAffx.221575.1.S1_atpmrna38527hypothetical protein-2e-11At5g23990FRO5 (FERRIC REDUCTION OXIDASE 5)O.I.H.G.S.X.
0.3863.70.92PtpAffx.77102.1.S1_atCV239221hypothetical protein-2e-44At4g30440GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1)O.I.H.G.S.X.
0.3661.60.88Ptp.2447.1.S1_atCK093683hypothetical protein-1e+1At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.
0.3357.50.89PtpAffx.47432.1.S1_s_atBU815065NAC domain protein, IPR003441 /// NAC domain protein, IPR003441-1e-9At5g22380anac090 (Arabidopsis NAC domain containing protein 90)O.I.H.G.S.X.
0.2950.50.87PtpAffx.200701.1.S1_s_atpmrna1352NAC domain protein, IPR003441 /// NAC domain protein, IPR003441-4e-4At3g44350anac061 (Arabidopsis NAC domain containing protein 61)O.I.H.G.S.X.
0.2950.50.93PtpAffx.4010.2.A1_a_atCV254509hypothetical protein-9e-8At2g27080harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.2645.20.92PtpAffx.223981.1.S1_s_atpmrna42208hypothetical protein-2e-1At3g30845unknown proteinO.I.H.G.S.X.
0.2543.60.93PtpAffx.30967.3.S1_atCX187005hypothetical protein-9e-11At2g35710glycogenin glucosyltransferase (glycogenin)-relatedO.I.H.G.S.X.
0.2238.30.87PtpAffx.50868.1.A1_atCV229374hypothetical protein-2e-12At2g27080harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.2136.50.92Ptp.4210.1.S1_atBU826578--6e-2At5g35120unknown proteinO.I.H.G.S.X.
0.2136.50.87PtpAffx.224604.1.S1_atpmrna43290hypothetical protein-5e-4At5g04370NAMT1O.I.H.G.S.X.
0.1016.30.92PtpAffx.84033.1.S1_atCK103745hypothetical protein-2e-7At4g12420SKU5O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.197.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.293.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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