Co-expression analysis

Gene ID	PtpAffx.221390.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g01750: unknown protein (HF=2e+0)
Module size	7 genes
NF	0.03
%ile	5.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.80	PtpAffx.221390.1.S1_x_at	pmrna38261	hypothetical protein	-	2e+0	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.81	PtpAffx.754.1.A1_at	CV277885	-	-	2e-9	At1g49390	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.80	Ptp.2838.2.A1_at	DN485482	-	-	9e+0	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.80	PtpAffx.212331.1.S1_at	pmrna24177	hypothetical protein	-	1e+0	At5g08150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.205398.1.S1_at	pmrna10690	hypothetical protein	-	4e-1	At2g34330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.81	PtpAffx.221089.1.S1_at	pmrna37678	hypothetical protein	-	1e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.82	PtpAffx.125658.1.A1_at	DN487640	-	-	1e+0	At1g79880	La domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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