Co-expression analysis

Gene ID	PtpAffx.221180.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g09890: protein kinase, putative (HF=2e-66)
Module size	7 genes
NF	0.32
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.88	PtpAffx.221180.1.S1_at	pmrna37857	hypothetical protein	-	2e-66	At5g09890	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.211313.1.S1_at	pmrna22182	hypothetical protein	-	7e-4	At1g52855	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.88	PtpAffx.126959.1.A1_at	CV277847	hypothetical protein	-	4e+0	At4g36925	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.86	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.69725.1.S1_a_at	DN494612	hypothetical protein	-	1e+0	At2g41130	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.147103.1.A1_at	CV251110	thioredoxin h	-	2e+0	At2g41160	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	PtpAffx.204039.1.S1_at	pmrna7968	hypothetical protein	-	2e+0	At5g24060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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