Co-expression analysis

Gene ID PtpAffx.221165.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g61590: protein kinase, putative (HF=6e-2)
Module size 6 genes
NF 0.02
%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.79PtpAffx.221165.1.S1_atpmrna37819hypothetical protein-6e-2At1g61590protein kinase, putativeO.I.H.G.S.X.
0.046.90.92Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-O.I.H.G.S.X.
0.046.90.92PtpAffx.249.108.A1_x_atBP934595aquaporin, MIP family, PIP subfamily-1e-33At3g53420PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)O.I.H.G.S.X.
0.023.60.80PtpAffx.618.11.S1_atCV247448--6e-3At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.012.20.93PtpAffx.159029.2.A1_s_atCV274904hypothetical protein-1e-19At1g59520CW7O.I.H.G.S.X.
0.012.20.91PtpAffx.37138.1.S1_s_atCV264244thioredoxin h-3e-7At1g19730ATTRX4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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