CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.221137.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g47550: unknown protein (HF=6e-109)

Module size 25 genes

NF 0.43

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.95 PtpAffx.221137.1.S1_at pmrna37769 hypothetical protein - 6e-109 At1g47550 unknown protein O.I. H.G. S.X.
0.63 88.1 0.96 PtpAffx.130346.1.S1_at CN523190 hypothetical protein - 2e-33 At2g26430 RCY1 (ARGININE-RICH CYCLIN 1) O.I. H.G. S.X.
0.63 88.1 0.97 PtpAffx.156707.1.S1_s_at BU873655 hypothetical protein - 4e-4 At2g03110 RNA binding / nucleic acid binding O.I. H.G. S.X.
0.54 80.8 0.97 PtpAffx.134857.2.S1_at CN523812 hypothetical protein - 2e-24 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.52 79.4 0.96 PtpAffx.221779.1.S1_s_at pmrna38830 histone acetyltransferase - 1e-53 At3g54610 GCN5 O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.151338.1.S1_at DN500589 hypothetical protein - 3e-20 At5g56290 PEX5 (PEROXIN 5) O.I. H.G. S.X.
0.49 75.7 0.96 PtpAffx.100628.1.S1_s_at CF232037 hypothetical protein - 2e+0 At2g38350 unknown protein O.I. H.G. S.X.
0.48 75.4 0.97 PtpAffx.132468.1.S1_s_at DN498520 - - 4e-1 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.48 75.4 0.97 PtpAffx.3977.1.S1_s_at CA821307 hypothetical protein - 2e-18 At5g52040 ATRSP41 O.I. H.G. S.X.
0.45 72.3 0.97 PtpAffx.61544.1.A1_at CA931045 hypothetical protein - 4e-19 At3g59380 FTA (FARNESYLTRANSFERASE A) O.I. H.G. S.X.
0.43 69.7 0.97 PtpAffx.120301.1.S1_s_at CF235521 hypothetical protein - 9e-2 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) O.I. H.G. S.X.
0.42 68.6 0.97 PtpAffx.134857.1.S1_at CX185540 hypothetical protein - 2e-43 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.41 67.7 0.97 PtpAffx.85760.1.S1_s_at CX181147 hypothetical protein - 6e-6 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.40 67.0 0.96 PtpAffx.8652.2.S1_at CA826343 hypothetical protein - 3e-57 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.40 67.0 0.97 PtpAffx.3203.6.S1_a_at CV131510 hypothetical protein - 3e-11 At4g24940 SAE1A (SUMO-ACTIVATING ENZYME 1A) O.I. H.G. S.X.
0.39 64.6 0.96 Ptp.4375.1.S1_s_at CX176552 hypothetical protein - 9e-24 At4g18330 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative O.I. H.G. S.X.
0.39 64.6 0.96 PtpAffx.21417.1.S1_at CN520322 hypothetical protein - 3e-135 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) O.I. H.G. S.X.
0.38 63.7 0.97 PtpAffx.149416.1.S1_at CN524567 hypothetical protein - 5e-25 At3g07220 transcriptional activator, putative O.I. H.G. S.X.
0.38 63.7 0.96 PtpAffx.144041.1.S1_s_at CX175818 hypothetical protein - 9e-14 At3g26370 unknown protein O.I. H.G. S.X.
0.37 62.3 0.97 PtpAffx.26440.3.S1_a_at CV237961 hypothetical protein - 1e-24 At3g53500 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.33 57.5 0.96 PtpAffx.496.3.S1_at AJ775413 hypothetical protein - 3e-4 At5g56680 SYNC1 O.I. H.G. S.X.
0.29 50.5 0.96 PtpAffx.105080.1.S1_s_at BP923549 hypothetical protein - 5e-38 At1g55680 WD-40 repeat family protein O.I. H.G. S.X.
0.26 45.2 0.97 PtpAffx.79842.1.S1_at BU884342 hypothetical protein - 6e-9 At3g43700 ATBPM6 (BTB-POZ and MATH domain 6) O.I. H.G. S.X.
0.24 41.8 0.96 PtpAffx.78955.1.S1_at BU876794 hypothetical protein - 6e-55 At4g24550 clathrin adaptor complexes medium subunit family protein O.I. H.G. S.X.
0.21 36.5 0.96 PtpAffx.63140.2.S1_s_at DN500684 hypothetical protein - 7e-11 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	96.0	0.95	PtpAffx.221137.1.S1_at	pmrna37769	hypothetical protein	-	6e-109	At1g47550	unknown protein	O.I.	H.G.	S.X.
0.63	88.1	0.96	PtpAffx.130346.1.S1_at	CN523190	hypothetical protein	-	2e-33	At2g26430	RCY1 (ARGININE-RICH CYCLIN 1)	O.I.	H.G.	S.X.
0.63	88.1	0.97	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.
0.54	80.8	0.97	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.
0.52	79.4	0.96	PtpAffx.221779.1.S1_s_at	pmrna38830	histone acetyltransferase	-	1e-53	At3g54610	GCN5	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.151338.1.S1_at	DN500589	hypothetical protein	-	3e-20	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.
0.49	75.7	0.96	PtpAffx.100628.1.S1_s_at	CF232037	hypothetical protein	-	2e+0	At2g38350	unknown protein	O.I.	H.G.	S.X.
0.48	75.4	0.97	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.
0.48	75.4	0.97	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	O.I.	H.G.	S.X.
0.45	72.3	0.97	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.
0.43	69.7	0.97	PtpAffx.120301.1.S1_s_at	CF235521	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.
0.42	68.6	0.97	PtpAffx.134857.1.S1_at	CX185540	hypothetical protein	-	2e-43	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.
0.41	67.7	0.97	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.8652.2.S1_at	CA826343	hypothetical protein	-	3e-57	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.
0.40	67.0	0.97	PtpAffx.3203.6.S1_a_at	CV131510	hypothetical protein	-	3e-11	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	O.I.	H.G.	S.X.
0.39	64.6	0.96	Ptp.4375.1.S1_s_at	CX176552	hypothetical protein	-	9e-24	At4g18330	eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative	O.I.	H.G.	S.X.
0.39	64.6	0.96	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.
0.38	63.7	0.97	PtpAffx.149416.1.S1_at	CN524567	hypothetical protein	-	5e-25	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.
0.38	63.7	0.96	PtpAffx.144041.1.S1_s_at	CX175818	hypothetical protein	-	9e-14	At3g26370	unknown protein	O.I.	H.G.	S.X.
0.37	62.3	0.97	PtpAffx.26440.3.S1_a_at	CV237961	hypothetical protein	-	1e-24	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.496.3.S1_at	AJ775413	hypothetical protein	-	3e-4	At5g56680	SYNC1	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.105080.1.S1_s_at	BP923549	hypothetical protein	-	5e-38	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.26	45.2	0.97	PtpAffx.79842.1.S1_at	BU884342	hypothetical protein	-	6e-9	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.
0.24	41.8	0.96	PtpAffx.78955.1.S1_at	BU876794	hypothetical protein	-	6e-55	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.
0.21	36.5	0.96	PtpAffx.63140.2.S1_s_at	DN500684	hypothetical protein	-	7e-11	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.5 90.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7 85.5 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6 84.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6 84.5 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6 84.5 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.221137.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g47550: unknown protein (HF=6e-109)
Module size	25 genes
NF	0.43
%ile	71.7

Co-expression analysis

Gene ID PtpAffx.221137.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g47550: unknown protein (HF=6e-109) Module size 25 genes NF 0.43 %ile 71.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.221137.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g47550: unknown protein (HF=6e-109)

Module size 25 genes

NF 0.43

%ile 71.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays