Co-expression analysis

Gene ID PtpAffx.221100.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At2g44840: ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) (HF=9e-20)
Module size 20 genes
NF 0.60
%ile 89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8196.10.77PtpAffx.221100.1.S1_atpmrna37697AP2/ERF domain-containing transcription factor-9e-20At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.7895.10.91PtpAffx.221103.1.S1_atpmrna37700--7e-5At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.7694.30.85PtpAffx.146622.1.A1_atCV269348--3e-2At2g27690CYP94C1O.I.H.G.S.X.
0.7192.60.89PtpAffx.204806.1.S1_atpmrna9474hypothetical protein-2e-2At5g12340unknown proteinO.I.H.G.S.X.
0.6891.30.90PtpAffx.59348.1.S1_atCA928346hypothetical protein-3e-1At5g08370AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)O.I.H.G.S.X.
0.6791.10.91PtpAffx.54562.1.A1_atCV243605AP2/ERF domain-containing transcription factor-8e-31At5g51990CBF4 (C- REPEAT-BINDING FACTOR 4)O.I.H.G.S.X.
0.6791.10.91PtpAffx.93687.1.S1_atBP927882AP2/ERF domain-containing transcription factor-1e+0At1g71450AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.6488.40.90PtpAffx.204670.1.S1_atpmrna9194AP2/ERF domain-containing transcription factor-7e-9At1g43160RAP2.6 (related to AP2 6)O.I.H.G.S.X.
0.6287.20.90PtpAffx.8577.2.A1_atCV256116--2e-31At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.5984.90.85PtpAffx.138857.1.A1_atBP930260cytochrome P450-4e+0At3g04040unknown proteinO.I.H.G.S.X.
0.5884.20.91PtpAffx.35610.1.A1_atCV257792hypothetical protein-1e-13At1g06180ATMYB13 (MYB DOMAIN PROTEIN 13)O.I.H.G.S.X.
0.5884.20.88PtpAffx.86908.1.S1_atDN494910hypothetical protein-1e+0At5g28610-O.I.H.G.S.X.
0.5582.20.90PtpAffx.119343.2.A1_a_atBP936124hypothetical protein-4e-6At4g29780unknown proteinO.I.H.G.S.X.
0.5582.20.87PtpAffx.203035.1.S1_atpmrna6011AP2/ERF domain-containing transcription factor-3e-2At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5078.60.87PtpAffx.204767.1.S1_atpmrna9386hypothetical protein-7e-26At1g58290HEMA1O.I.H.G.S.X.
0.4975.70.88PtpAffx.8810.1.S1_atCK096534AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-2e-34At1g21910AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.4975.70.88PtpAffx.30602.1.A1_atCV268363hypothetical protein-1e-4At5g17800AtMYB56 (myb domain protein 56)O.I.H.G.S.X.
0.4774.60.87PtpAffx.50868.1.A1_atCV229374hypothetical protein-2e-12At2g27080harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.4369.70.89PtpAffx.106356.1.S1_s_atCX660277AP2/ERF domain-containing transcription factor-9e-2At5g19800hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4268.60.87PtpAffx.95085.1.A1_s_atCV269516hypothetical protein-9e-2At5g35120unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.497.7GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.995.1GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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