Co-expression analysis

Gene ID PtpAffx.220976.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g53440: leucine-rich repeat family protein / protein kinase family protein (HF=5e-56)
Module size 8 genes
NF 0.44
%ile 73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.91PtpAffx.220976.1.S1_atpmrna37484hypothetical protein-5e-56At1g53440leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.133674.1.A1_atBP933428--3e-1At1g21528unknown proteinO.I.H.G.S.X.
0.5380.50.93PtpAffx.220976.1.S1_x_atpmrna37484hypothetical protein-5e-56At1g53440leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4673.70.93PtpAffx.205507.1.S1_atpmrna10884hypothetical protein-2e-62At1g77810galactosyltransferase family proteinO.I.H.G.S.X.
0.4673.70.94PtpAffx.1634.3.A1_atBP933609hypothetical protein-3e-1At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.4471.90.92PtpAffx.220005.1.S1_atpmrna36240hypothetical protein-1e-68At5g41150UVH1 (ULTRAVIOLET HYPERSENSITIVE 1)O.I.H.G.S.X.
0.3559.70.94PtpAffx.200254.1.S1_atpmrna491hypothetical protein-1e-16At5g23680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2441.80.94PtpAffx.37754.1.A1_atCV240442hypothetical protein-1e+0At1g78040pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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