Co-expression analysis

Gene ID PtpAffx.220851.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g59990: MAP2B (METHIONINE AMINOPEPTIDASE 2B) (HF=7e-9)
Module size 6 genes
NF 0.26
%ile 47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.83PtpAffx.220851.1.S1_atpmrna37301hypothetical protein-7e-9At3g59990MAP2B (METHIONINE AMINOPEPTIDASE 2B)O.I.H.G.S.X.
0.5078.60.83PtpAffx.223533.1.S1_atpmrna41583hypothetical protein-9e-1At2g42460meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.1932.70.83PtpAffx.32922.1.S1_atCK095264--3e-2At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)O.I.H.G.S.X.
0.1830.80.85PtpAffx.60638.1.A1_atCK095398--2e-1At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.
0.1729.10.83PtpAffx.221338.1.S1_atpmrna38163--2e-5At5g47850CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)O.I.H.G.S.X.
0.1321.60.84PtpAffx.225217.1.S1_atpmrna44400hypothetical protein-2e-3At3g23010AtRLP36 (Receptor Like Protein 36)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.699.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage