Co-expression analysis

Gene ID	PtpAffx.220765.1.S1_s_at
Gene name	hypothetical protein /// cyclic nucleotide-gated channel
Homology with Arabidopsis	Similar to At4g30360: ATCNGC17 (HF=4e-12)
Module size	14 genes
NF	0.44
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.95	PtpAffx.220765.1.S1_s_at	pmrna37189	hypothetical protein /// cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.96	PtpAffx.200755.1.S1_s_at	pmrna1462	hypothetical protein	-	2e-46	At1g07380	ceramidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.96	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.71184.1.S1_s_at	BU821746	hypothetical protein	-	7e-23	At5g16300	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.155942.1.S1_at	CF235846	hypothetical protein	-	8e-19	At4g31490	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.204155.1.S1_s_at	pmrna8187	hypothetical protein	-	2e+0	At5g07790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.96	Ptp.2530.2.S1_s_at	DN490660	hypothetical protein	-	2e-6	At1g80490	TPR1 (TOPLESS-RELATED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.219510.1.S1_at	pmrna35453	hypothetical protein	-	1e-9	At1g19870	iqd32 (IQ-domain 32)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	PtpAffx.222812.1.S1_s_at	pmrna40480	hypothetical protein	-	7e-35	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.124616.1.S1_s_at	CK099809	hypothetical protein	-	4e-134	At3g02530	chaperonin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.150588.1.S1_at	BP927891	hypothetical protein	-	5e-13	At1g79090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	Ptp.8135.2.S1_at	DN503783	-	-	2e-7	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.154769.1.S1_at	CN524357	hypothetical protein	-	2e-49	At1g60070	binding / clathrin binding / protein binding / protein transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.97	PtpAffx.163462.1.S1_at	BU823342	hypothetical protein	-	2e-20	At2g20580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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