Co-expression analysis

Gene ID	PtpAffx.220680.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g07190: ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) (HF=1e+1)
Module size	7 genes
NF	0.30
%ile	52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.81	PtpAffx.220680.1.S1_at	pmrna37090	hypothetical protein	-	1e+1	At5g07190	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.86	PtpAffx.223939.1.S1_x_at	pmrna42164	hypothetical protein	-	6e+0	Atcg01090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.86	PtpAffx.218733.1.S1_at	pmrna34456	hypothetical protein	-	7e+0	At2g29960	CYP5 (CYCLOPHILIN 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.84	PtpAffx.38121.1.A1_at	CV225473	-	-	3e+0	At3g01185	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.82	PtpAffx.214644.1.S1_at	pmrna28444	hypothetical protein	-	1e+0	At4g04080	ISU3 (ISCU-LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.82	PtpAffx.220920.1.S1_at	pmrna37405	hypothetical protein	-	2e+0	At3g55330	PPL1 (PsbP-like protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.82	PtpAffx.43118.1.A1_at	CV267463	-	-	4e-1	At5g22720	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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