Co-expression analysis

Gene ID	PtpAffx.220540.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g42590: GRF9 (GENERAL REGULATORY FACTOR 9) (HF=2e+1)
Module size	12 genes
NF	0.01
%ile	0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.72	PtpAffx.220540.1.S1_at	pmrna36944	hypothetical protein	-	2e+1	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.200192.1.S1_at	pmrna360	autoinhibited H+ ATPase	-	1e-59	At1g80660	AHA9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.73	PtpAffx.210268.1.S1_s_at	pmrna20200	hypothetical protein	-	2e-1	At5g21060	homoserine dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.78	PtpAffx.217321.1.S1_at	pmrna32535	hypothetical protein	-	8e-2	At1g21600	PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.79	PtpAffx.201163.1.S1_at	pmrna2288	hypothetical protein	-	3e+0	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.81	PtpAffx.204862.1.S1_at	pmrna9611	hypothetical protein	-	4e+0	At5g56990	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.77	Ptp.3124.1.S1_at	DN498905	-	-	1e-21	Atcg01280	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.75	PtpAffx.222343.1.S1_at	pmrna39691	hypothetical protein	-	5e+0	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.77	PtpAffx.224580.1.S1_at	pmrna43237	histone H3	-	6e-49	At5g10980	histone H3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.80	PtpAffx.89272.1.A1_at	CV231191	-	-	1e+0	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.77	PtpAffx.224157.1.S1_at	pmrna42430	pleiotropic drug resistance, ABC transporter family protein	-	8e-31	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.73	PtpAffx.214102.1.S1_at	pmrna27452	hypothetical protein	-	5e-1	At3g27210	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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