Co-expression analysis

Gene ID	PtpAffx.220447.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g55560: AGF2 (AT-hook protein of GA feedback 2) (HF=1e+1)
Module size	7 genes
NF	0.11
%ile	22.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.87	PtpAffx.220447.1.S1_at	pmrna36839	hypothetical protein	-	1e+1	At3g55560	AGF2 (AT-hook protein of GA feedback 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.88	PtpAffx.222502.1.S1_at	pmrna39975	hypothetical protein	-	4e-3	At3g57950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.211253.1.S1_x_at	pmrna22088	hypothetical protein	-	5e-35	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.120374.1.A1_at	CV283801	-	-	1e-1	At1g64000	WRKY56	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.202121.1.S1_at	pmrna4240	hypothetical protein	-	1e-19	At3g60240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.91	PtpAffx.746.1.A1_at	CV278659	-	-	2e-29	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.88	PtpAffx.200947.1.S1_at	pmrna1862	aminophospholipid ATPase	-	1e-53	At3g27870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage