CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.220430.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g02250: invertase/pectin methylesterase inhibitor family protein (HF=9e-1)

Module size 13 genes

NF 0.14

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.8 0.83 PtpAffx.220430.1.S1_at pmrna36821 - - 9e-1 At4g02250 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.33 57.5 0.87 PtpAffx.86591.1.S1_at DN498052 - - 1e-1 At3g46040 RPS15AD (ribosomal protein S15A D) O.I. H.G. S.X.
0.21 36.5 0.96 Ptp.6486.1.S1_s_at CV249938 actin 1 - 0 At1g49240 ACT8 (ACTIN 8) O.I. H.G. S.X.
0.20 34.6 0.90 PtpAffx.212653.1.S1_at pmrna24761 hypothetical protein - 7e-4 At5g08130 BIM1 O.I. H.G. S.X.
0.20 34.6 0.96 Ptp.1497.2.S1_x_at CV243508 s-adenosylmethionine synthetase 5 - 3e-179 At1g02500 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) O.I. H.G. S.X.
0.19 32.7 0.96 PtpAffx.1258.1.S1_s_at CV242350 actin 1 - 5e-138 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.15 25.3 0.95 PtpAffx.222280.1.S1_s_at pmrna39594 hypothetical protein - 2e-5 At2g43410 FPA O.I. H.G. S.X.
0.14 23.5 0.90 PtpAffx.200880.1.S1_at pmrna1726 hypothetical protein - 9e-41 At5g12260 - O.I. H.G. S.X.
0.14 23.5 0.93 PtpAffx.200299.1.S1_at pmrna591 hypothetical protein - 1e-50 At3g47630 - O.I. H.G. S.X.
0.13 21.6 0.96 PtpAffx.891.14.S1_at CV228832 - - 8e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.12 19.6 0.92 PtpAffx.144328.2.S1_s_at CK101570 hypothetical protein - 3e-2 At3g15050 IQD10 (IQ-domain 10) O.I. H.G. S.X.
0.09 14.6 0.94 Ptp.6124.1.S1_at DN500469 hypothetical protein - 7e-24 At5g58950 protein kinase family protein O.I. H.G. S.X.
0.04 6.9 0.92 Ptp.5393.1.S1_s_at BU837915 hypothetical protein - 1e-84 At4g38510 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 96.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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