Co-expression analysis

Gene ID	PtpAffx.220354.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g07840: ankyrin repeat family protein (HF=3e+1)
Module size	6 genes
NF	0.02
%ile	4.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.76	PtpAffx.220354.1.S1_at	pmrna36732	-	-	3e+1	At5g07840	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.89	PtpAffx.22598.1.S1_at	CV273129	hypothetical protein	-	5e-4	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.90	Ptp.320.1.S1_at	BU834618	hypothetical protein	-	2e-32	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.93	PtpAffx.42648.1.S1_at	CV260478	hypothetical protein	-	7e-27	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.92	Ptp.6740.1.S1_at	CV277438	hypothetical protein	-	6e-22	At5g64400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.92	PtpAffx.6000.1.A1_at	CV250692	-	-	1e-9	At1g06515	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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